Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1339
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.047
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.25
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 28 1.8
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 2.4
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 3.1
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.1
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 26 5.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 9.5
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 9.5
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 9.5
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 9.5
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 9.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.047
Identities = 34/162 (20%), Positives = 61/162 (37%)
Frame = +1
Query: 217 TASLMKSRSPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGF 396
T + S S L+T T + + ++ S T P ++ + +T+
Sbjct: 529 TTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 588
Query: 397 VLCYSFKQSCFMFPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTISTRTCTL 576
C + + ++S SW T P TS S+V S +++ T
Sbjct: 589 TNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTS 648
Query: 577 KTFTLSDSLYVKFSTLST*WVKYSSWTSFWTENFQLMAVTWS 702
TFT S S+ S+ +T ++S +S + N + T S
Sbjct: 649 TTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSSTVS 690
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.7 bits (66), Expect = 0.25
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -2
Query: 370 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 212
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 211 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 50
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 803 VPEWTVFMEGAFSYFRKHSGHRVHAFLGL 717
V E+T E FRK S HR++ LGL
Sbjct: 37 VAEFTALSEKPLEGFRKISSHRIYGTLGL 65
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -2
Query: 283 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 104
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 103 SSLR 92
+SLR
Sbjct: 200 ASLR 203
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -1
Query: 290 RDGESRVYPAVR-VHNGERDFINDAVN 213
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 489 DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 602
D V +E KS K LL +T LH +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +3
Query: 558 HTNLHTQNFYAFRFFICEVLNFINVVGQIFFMDFFLDGEFSTYGSDVVSFTEMEPEERVD 737
HT L N Y R ++LN FM+ F +F+ Y V+ T+ + V
Sbjct: 95 HTTLCGSNKYPVRDPFFKMLNRSLAT----FMNAFTASDFTFYPFATVNTTDYKNLRDVY 150
Query: 738 PMARVFPKVTKCTFHKYG 791
A +FPK+ K F + G
Sbjct: 151 LDATLFPKLRKLDFLQEG 168
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 624 INVVGQIFFMDFFLDGE 674
++ GQ F++DF LDG+
Sbjct: 372 VHTSGQFFYLDFLLDGK 388
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 260 VRVHNGERDFINDAVNRVTDVL 195
V NG R+++ DAV R DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 444 LWKTWEGGRIKMLVLDLNCPIVEDECKSGRKKLLVDYFHTNLHTQNF 584
+W G +K LV +N P+ + RK LLV ++ + ++
Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLVSNLNSQIRLWDY 252
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 390 WVCFVLFFQAILFYVP---RYLWKTWEGGRIKMLV 485
WV L+F+AI+ VP L+ T +GG++++ V
Sbjct: 51 WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQV 85
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 9.5
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +3
Query: 525 SGRKKLLVDYFHTNLHTQNFYAFRFFICEVLNFINVVGQI----FFMDFFLDGEFSTYGS 692
S KKLL+D N + N ++ +FIC +++ + V G I F D E + +
Sbjct: 844 SSVKKLLLDLLCYNDNANNEFSDAYFICLLIDSL-VEGLIPRGETVQYAFSDPEHMEFVN 902
Query: 693 DVVSFTEMEPEERVDPMARVFPKVTKC 773
V++ E++ R+D F + C
Sbjct: 903 QVIN--EIDRYMRIDACMPSFKNIITC 927
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 407 ILSSNPVLCSPLLVENVGRRPHQDVGPGS 493
I S NP L S N+ RR D GP S
Sbjct: 364 IPSENPQLQSGFTTPNLSRRNSSDFGPNS 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,553,908
Number of Sequences: 5004
Number of extensions: 78307
Number of successful extensions: 260
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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