Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1338
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 248 3e-66
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 236 1e-62
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 102 2e-22
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 82 4e-16
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 8e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 9e-06
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.030
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 3.5
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 248 bits (607), Expect = 3e-66
Identities = 113/209 (54%), Positives = 150/209 (71%)
Frame = -3
Query: 740 FAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKI 561
F IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+
Sbjct: 40 FNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKL 99
Query: 560 LEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIA 381
L+KYRPE+ KRPNT+R G NT+T+LVE ++AQLV+IA
Sbjct: 100 LDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIA 159
Query: 380 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 201
HDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+
Sbjct: 160 HDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKL 219
Query: 200 VEAIKTNFNERYEELRKHWGGGVLGNKSN 114
VE + NF+ER+EE+RKHWGGGV+ KS+
Sbjct: 220 VETVNNNFSERHEEIRKHWGGGVMSAKSD 248
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 236 bits (578), Expect = 1e-62
Identities = 112/209 (53%), Positives = 149/209 (71%)
Frame = -3
Query: 740 FAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKI 561
F IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+
Sbjct: 40 FNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKL 99
Query: 560 LEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIA 381
L+KYRPE+ RPNT+R G NT+T+LVE ++AQLV+IA
Sbjct: 100 LDKYRPESTEVTK--------------------RPNTVRHGVNTITRLVETRRAQLVLIA 139
Query: 380 HDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKV 201
HDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+
Sbjct: 140 HDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKL 199
Query: 200 VEAIKTNFNERYEELRKHWGGGVLGNKSN 114
VE + NF+ER+EE+RKHWGGGV+ KS+
Sbjct: 200 VETVNNNFSERHEEIRKHWGGGVMSAKSD 228
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 102 bits (245), Expect = 2e-22
Identities = 44/68 (64%), Positives = 56/68 (82%)
Frame = -3
Query: 740 FAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKI 561
F IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+
Sbjct: 143 FNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKL 202
Query: 560 LEKYRPET 537
L+KYRPE+
Sbjct: 203 LDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 82.2 bits (194), Expect = 4e-16
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -3
Query: 740 FAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 591
F IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 143 FNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -3
Query: 449 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 276
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 275 VHRKTCTCLALTNVESGDRASFSKVVEAIK 186
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -3
Query: 452 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 273
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 272 HRKTCTCLALTNVESGDRASFSKVVEAIK 186
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = +3
Query: 495 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 614
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 106 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 255
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 106 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 255
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 106 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 255
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 106 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 255
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 106 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 255
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1
Query: 622 LRSTNLPRHWTRLQLRA 572
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,149,829
Number of Sequences: 27780
Number of extensions: 279329
Number of successful extensions: 896
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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