Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1337
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    31   0.19 
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    29   0.59 
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    29   0.59 
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   2.4  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   3.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   3.2  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   5.5  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    26   7.3  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    25   9.7  

>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = +1

Query: 7   MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 186
           M  G LY++  N R    L  A+     V +   +       S D   KFP  K+P F  
Sbjct: 1   MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57

Query: 187 ADGKVLLTESNAIAYY 234
           ADG   L+E  AI  Y
Sbjct: 58  ADG-FELSEVIAIVKY 72


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 127 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYY 234
           N   D   KFP  K+P F   DG   L+E+ AIA+Y
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFY 72


>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 656 KKGTLQLPMKVSAEEIWLPKPVSGSGHH 739
           +KGT  +  +  A +IWL  PVSG  H+
Sbjct: 89  EKGTYVINKQPPAHQIWLSSPVSGPKHY 116


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 701 IWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 796
           +W+P PV  SG    T+  C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 34  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 213
           P  F++ KA +  QY+          +FG  +K ++F K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 214 SN 219
           SN
Sbjct: 612 SN 613


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +3

Query: 327 TKVGSLKKDKVVNTSCEVISNRFNYIIRRWYKYESVFLLNLI*KLIKSTSHDFT 488
           TK G +  DK +  +   I++R+++  R W   E + + +++  LI+STS D T
Sbjct: 468 TKEGRIVDDKELKHN---IASRYDF--RSWLDQELIDMNSIVDSLIESTSVDLT 516


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 203 STFPSALSNAGTFPAGNFFKKSSDL 129
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 513 PLKIIIEDTHKSVIIFNYCIIFY 581
           P+ II  +  ++ +IFN C+IF+
Sbjct: 88  PISIIGSNYERNALIFNMCMIFH 110


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 704 WLPKPVSGSGHHGLTVNYCLLPV 772
           +LP  +SG G+  L+V Y  +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,374
Number of Sequences: 5004
Number of extensions: 58449
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)