Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1337
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 76 3e-14
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 69 3e-12
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274... 39 0.004
01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931 38 0.007
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 36 0.029
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 36 0.029
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 32 0.62
03_01_0249 - 1935355-1935827,1936129-1936330 30 2.5
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 29 4.4
01_01_0735 + 5730783-5733320 29 4.4
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 29 5.8
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 76.2 bits (179), Expect = 3e-14
Identities = 39/72 (54%), Positives = 50/72 (69%)
Frame = +1
Query: 19 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 198
VL+T+ N A+KALIAA+YSG V++A NF G +NK+ ++LK P GKVP E+ DG
Sbjct: 565 VLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGP 624
Query: 199 VLLTESNAIAYY 234
V ESNAIA Y
Sbjct: 625 VF--ESNAIARY 634
Score = 71.3 bits (167), Expect = 8e-13
Identities = 37/72 (51%), Positives = 47/72 (65%)
Frame = +1
Query: 19 VLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGK 198
VL+ N A+KALIAA+YSG V++ NF G +NK+ +FLK P GK+P E+ DG
Sbjct: 4 VLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGP 63
Query: 199 VLLTESNAIAYY 234
V ESNAIA Y
Sbjct: 64 VF--ESNAIARY 73
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 676 ANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQF 807
A+ L G L A + QW +S +E+ W++P LGI +
Sbjct: 88 ADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPY 131
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 676 ANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQF 807
++ L G L A + QW +S +E+ + W+FP LG +
Sbjct: 649 SDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPY 692
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 69.3 bits (162), Expect = 3e-12
Identities = 37/78 (47%), Positives = 49/78 (62%)
Frame = +1
Query: 1 PTMAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAF 180
P A VL+ N A+KALIAA+Y+G V++ NF G +NK+ +FLK P GK+P
Sbjct: 22 PVGMALVLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVL 81
Query: 181 ESADGKVLLTESNAIAYY 234
E+ +G V ESNAIA Y
Sbjct: 82 ETPEGAVF--ESNAIARY 97
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 679 NESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLG 795
N SL G L + + QW +S +E+ W++P LG
Sbjct: 104 NSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLG 142
>05_01_0350 +
2736096-2736242,2736460-2736508,2736704-2737046,
2743911-2744499
Length = 375
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 61 LIAAQYSGTDVK-VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYY 234
L+ + +G + VA + GE N+S L + P GK+PAFE DG+V L ES AI Y
Sbjct: 18 LVCLEEAGASYELVAVDMAAGE-NRSRHHLARSPFGKIPAFE--DGEVTLFESRAIQRY 73
>01_04_0025 - 15199036-15199493,15199633-15199681,15199782-15199931
Length = 218
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 55 KALIAAQYSGTDVK-VAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAY 231
+ L+ + G D + V +F+ GE N S + +++ P GK+PA + DG ++L ES AIA
Sbjct: 17 RVLVCLEEVGADYELVTVDFLAGEQN-SPEHVERNPFGKIPALQ--DGDLVLFESRAIAK 73
Query: 232 Y 234
Y
Sbjct: 74 Y 74
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 36.3 bits (80), Expect = 0.029
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 55 KALIAAQYSGTDVKVAPNFVFGET-NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAY 231
+ L+ + G D ++ + FG+ +K D L + P G+VPAF+ DG ++L ES AI
Sbjct: 17 RVLLCLEEVGADYEIV-DVDFGDREHKGPDHLARNPFGQVPAFQ--DGDLMLFESRAICR 73
Query: 232 Y 234
Y
Sbjct: 74 Y 74
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 36.3 bits (80), Expect = 0.029
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = +1
Query: 7 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 186
MA +Y + + L+ + G + +V P + +K + + P G+VPAFE
Sbjct: 1 MAPAKVYGPAMSTNVMRILVCLEEVGAEYEVVPVDMSTGEHKRPPHISRNPFGQVPAFE- 59
Query: 187 ADGKVLLTESNAIAYY 234
DG + L ES AI+ Y
Sbjct: 60 -DGDLTLFESRAISKY 74
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 31.9 bits (69), Expect = 0.62
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 22 LYTYPENFRAYKALIAAQYSGTDVKV-APNFVFGETNKSEDFLKKFPAGKVPAFESADGK 198
LY+Y + +++ IA G + + A N + GE + E F+K P VPA DG
Sbjct: 16 LYSYWRSSCSHRVRIALNLKGLEYEYKAVNLLKGEHSDPE-FMKVNPMKFVPAL--VDGD 72
Query: 199 VLLTESNAIAYYGE 240
++ +S AIA Y E
Sbjct: 73 AVIGDSYAIALYLE 86
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 127 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYY 234
+KS FLK P G+VPAF+ D + ES AI Y
Sbjct: 42 HKSPSFLKLQPFGQVPAFK--DSLTTVFESRAICRY 75
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 184 SADGKVLLTESNAIAYY-GEFFIFKYTY 264
+ DGK LL+ S+ Y G+ +IF+YTY
Sbjct: 415 NGDGKTLLSSSDQSKLYTGDCYIFQYTY 442
>01_01_0735 + 5730783-5733320
Length = 845
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 102 TEFRIWRDQQVRRLLEEVSCRKSACIRKCRWKSA 203
T F +W D + + +E SC+K C+ C K+A
Sbjct: 372 TYFHLWGDSRGAPMTDEESCKKD-CLSNCSCKAA 404
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 142 FLKKFPAGKVPAFESADGK 198
FLK P GKVP F DGK
Sbjct: 49 FLKISPEGKVPVFNGGDGK 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,422,504
Number of Sequences: 37544
Number of extensions: 353015
Number of successful extensions: 843
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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