Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1336
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    28   1.8  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   5.5  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   7.2  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   9.5  

>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 12  LNQQTVVMAYAFTILNSLQGLVIFIFHCLQNDKFRNECARLSRRHRWLSCCLYWTGQPSE 191
           +N QT     A   LNSLQ     +    +  K  N+ + +  RH WL C  Y   QPS+
Sbjct: 20  MNPQTKTFEGAINRLNSLQSNAKVLEVLRKRGKIPNDQSMVEMRH-WLRCIGY---QPSD 75


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 370 RRYTCQTTTQDRSVCPLRKTSPTVRRTHIASRLCIATG 483
           R  + Q T +DR +  +R ++P+  R+H  S  C+A G
Sbjct: 120 RATSSQETKRDRPLPNIRNSAPSATRSH--STPCVAPG 155


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = +3

Query: 576 WAGSNAGASVWKNTSSKHHVGNTSTLPHHDTLSRQLAPPNH 698
           W+  N       NTSS H     S  P H+     LA   H
Sbjct: 210 WSAGNLNHKPTLNTSSTHSNSEESRSPLHEPSEASLAHDEH 250


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 655 GSVEVFPTWCLEEVFFHTLA 596
           G++  FPT CL  V+ HT++
Sbjct: 677 GALSKFPTNCLRSVYSHTVS 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,182
Number of Sequences: 5004
Number of extensions: 75599
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)