Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1334
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    32   0.051
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   0.84 
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    25   7.8  

>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -3

Query: 208 NRNALLLHGRNRQGGGTYPCGLTRGPTTSNYNTMSIVFKGFLYG 77
           N   ++LHG N Q      CGL    T+SN N   I F  FL G
Sbjct: 106 NGELIVLHGINHQAAMLTACGLFM-VTSSNTNKWKIAFASFLLG 148


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 160 YHHPAYFCREAVMRFGLKGGAAVVTIIETLELISQGG 270
           +  P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 416 YPIFFTGGRTCCESARV 466
           Y IF+  G+ CC  +RV
Sbjct: 294 YGIFYNSGQVCCAGSRV 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,470
Number of Sequences: 5004
Number of extensions: 41359
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)