Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1333
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   5.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.9  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    25   7.8  

>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 222 DPMDHNDNMNLTRLSPSPGGLAXEASXVLYHEPAF 326
           DP  +N   N + LS SPG ++      ++  P F
Sbjct: 425 DPASYNALENRSELSASPGSVSSSRHSGIFATPTF 459


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
 Frame = +3

Query: 318 PAFWCSIS--YYELN 356
           P FWCSI   YY++N
Sbjct: 618 PTFWCSIGVLYYQIN 632


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 440 KSLTIARVGESVDRDXRLRGVERLPDPGVQLVVADAAPERRLV 312
           ++L IA +G  +DR  R+ G+   P PG   ++ +A   +R +
Sbjct: 159 ETLDIA-IGNCLDRFARIIGLSNAPSPGYN-IMQEAKKGKRFI 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,624
Number of Sequences: 5004
Number of extensions: 31107
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)