Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1333
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0757 + 24267599-24268882                                         33   0.091
08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290     29   2.0  
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934...    29   2.6  
05_07_0359 - 29539294-29540832,29542366-29542518                       29   2.6  
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348...    29   2.6  
08_02_0405 + 16790720-16791691,16792064-16792135,16794487-167946...    28   3.4  
01_05_0781 + 25140652-25142010                                         28   4.5  
05_03_0479 + 14529783-14530613                                         27   7.9  

>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 185 GDSAPRLHQRRWRPDGPQ*QHEPHTSKSVTWRPGVRGLXGAVPRA 319
           G S   +    WRP GP     P  ++   WRP   GL G  P A
Sbjct: 338 GSSTGWVANPSWRPAGPWVCFNPWPAQQQAWRPSSAGLLGPAPTA 382


>08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290
          Length = 377

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = +2

Query: 122 RGYTCTTRAGQH--NCTRELLNSGDSAPRLHQRRWR--PDG 232
           R Y C   A  H  +CT      G   PR H RRW   P+G
Sbjct: 45  RDYICFRAACHHWRSCTASPCGRGVVVPRFHPRRWMMLPEG 85


>10_08_0506 +
           18390892-18391373,18392699-18392798,18393152-18393485,
           18393756-18393868,18394437-18394565,18394746-18394839,
           18394942-18395025,18395265-18395896,18396662-18396951,
           18397098-18397242,18397876-18397973,18398075-18398156,
           18398607-18398612,18398845-18398928
          Length = 890

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 237 NDNMNLTRLSPSPGGLAXEASXVLYHEPAFWCSISYYELNTR 362
           NDN +   L  S GGL   AS ++ H P+F C +     NTR
Sbjct: 663 NDNPSGCELIASCGGLNTMASLIMKHFPSF-CFVVDNNYNTR 703


>05_07_0359 - 29539294-29540832,29542366-29542518
          Length = 563

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 419 VGESVDRDXRLRGVERLPDP 360
           VG S+DR+  LR ++ LPDP
Sbjct: 44  VGRSIDREMILRALKELPDP 63


>05_03_0662 +
           16732965-16733037,16733310-16733413,16734468-16734861,
           16736291-16736901,16739238-16739289,16739771-16739826,
           16739962-16740190,16740980-16741212,16741480-16741740
          Length = 670

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 326 LVQHQLLRAEHQGRGDVPRLATXHHGRRIHRPE 424
           L+Q  +L +   G G++P+    HHGR   RPE
Sbjct: 573 LLQMLMLFSASMGTGEMPKGGLLHHGRDNLRPE 605


>08_02_0405 +
           16790720-16791691,16792064-16792135,16794487-16794621,
           16794630-16794758
          Length = 435

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = +2

Query: 122 RGYTCTTRAGQH--NCTRELLNSGDSAPRLHQRRWR--PDG 232
           R Y C   A  H  +CT      G   PR H RRW   P+G
Sbjct: 49  RDYICFRAACHHWRSCTASPCGRGVVDPRFHPRRWMMLPEG 89


>01_05_0781 + 25140652-25142010
          Length = 452

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 260 SKSVTWRPGVRGLXGAVPRAGVLVQHQLLRAEHQGRGD 373
           ++   WR G   L G V R+G L    ++ A H   GD
Sbjct: 384 AERAVWRLGDEQLAGYVQRSGALANAVIVGAGHMAAGD 421


>05_03_0479 + 14529783-14530613
          Length = 276

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -1

Query: 470 PVHVRKQTETKSLTIARVGESVDRDXRLRGVERLPDPGVQLVVADAAPERRL 315
           P H R+   T +  +AR    +    R RGV R P       + D + ++RL
Sbjct: 66  PKHPRRLVPTATAALARRRAGMAASRRFRGVRRRPWGRFSAEIRDPSLQKRL 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,783,953
Number of Sequences: 37544
Number of extensions: 260291
Number of successful extensions: 920
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)