Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1333
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U34902-1|AAA97607.1| 393|Caenorhabditis elegans sma-3 protein. 73 1e-13
U00046-9|AAC47050.2| 393|Caenorhabditis elegans Small protein 3... 73 1e-13
U34778-1|AAA97606.1| 418|Caenorhabditis elegans sma-2 protein. 72 2e-13
U10327-1|AAC46583.1| 418|Caenorhabditis elegans MAD homolog 1 p... 72 2e-13
M98552-8|AAA28204.3| 418|Caenorhabditis elegans Small protein 2... 72 2e-13
U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein. 58 4e-09
U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4... 58 4e-09
Z81055-6|CAB02890.3| 287|Caenorhabditis elegans Hypothetical pr... 47 6e-06
AF190910-1|AAF03892.1| 287|Caenorhabditis elegans Smad protein ... 47 6e-06
Z75546-1|CAA99889.1| 546|Caenorhabditis elegans Hypothetical pr... 41 5e-04
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 28 3.1
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 28 3.1
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 28 3.1
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 28 3.1
Z83731-4|CAB06021.2| 471|Caenorhabditis elegans Hypothetical pr... 27 5.3
AM498742-1|CAM58448.1| 471|Caenorhabditis elegans MAP kinase pr... 27 5.3
U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fb... 27 9.3
U00066-6|ABC71810.1| 189|Caenorhabditis elegans Small protein 4... 27 9.3
>U34902-1|AAA97607.1| 393|Caenorhabditis elegans sma-3 protein.
Length = 393
Score = 72.5 bits (170), Expect = 1e-13
Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Frame = +3
Query: 264 SPSPGGLAXEASXVLYHE-------PAFWCSISYYELNTRVGETFHASQPXITVDGFTDP 422
SPSP + + V H+ P W I+Y+ELN+RVGE F ITVDG+T+P
Sbjct: 169 SPSPSVFSEDGGEVQVHQRPPPFRHPKSWAQITYFELNSRVGEVFKLVNLSITVDGYTNP 228
Query: 423 SNSE-RFCLGLLSNVNRN 473
SNS R CLG L+NVNRN
Sbjct: 229 SNSNTRICLGQLTNVNRN 246
>U00046-9|AAC47050.2| 393|Caenorhabditis elegans Small protein 3
protein.
Length = 393
Score = 72.5 bits (170), Expect = 1e-13
Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Frame = +3
Query: 264 SPSPGGLAXEASXVLYHE-------PAFWCSISYYELNTRVGETFHASQPXITVDGFTDP 422
SPSP + + V H+ P W I+Y+ELN+RVGE F ITVDG+T+P
Sbjct: 169 SPSPSVFSEDGGEVQVHQRPPPFRHPKSWAQITYFELNSRVGEVFKLVNLSITVDGYTNP 228
Query: 423 SNSE-RFCLGLLSNVNRN 473
SNS R CLG L+NVNRN
Sbjct: 229 SNSNTRICLGQLTNVNRN 246
>U34778-1|AAA97606.1| 418|Caenorhabditis elegans sma-2 protein.
Length = 418
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/54 (61%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +3
Query: 315 EPAFWCSISYYELNTRVGETFHASQPXITVDGFTDPS-NSERFCLGLLSNVNRN 473
E FW ++SYYELNTRVGE S IT+DGFTDP N + LGL SNVNRN
Sbjct: 218 EEQFWATVSYYELNTRVGEQVKVSSTTITIDGFTDPCINGSKISLGLFSNVNRN 271
>U10327-1|AAC46583.1| 418|Caenorhabditis elegans MAD homolog 1
protein.
Length = 418
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/54 (61%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +3
Query: 315 EPAFWCSISYYELNTRVGETFHASQPXITVDGFTDPS-NSERFCLGLLSNVNRN 473
E FW ++SYYELNTRVGE S IT+DGFTDP N + LGL SNVNRN
Sbjct: 218 EEQFWATVSYYELNTRVGEQVKVSSTTITIDGFTDPCINGSKISLGLFSNVNRN 271
>M98552-8|AAA28204.3| 418|Caenorhabditis elegans Small protein 2
protein.
Length = 418
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/54 (61%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +3
Query: 315 EPAFWCSISYYELNTRVGETFHASQPXITVDGFTDPS-NSERFCLGLLSNVNRN 473
E FW ++SYYELNTRVGE S IT+DGFTDP N + LGL SNVNRN
Sbjct: 218 EEQFWATVSYYELNTRVGEQVKVSSTTITIDGFTDPCINGSKISLGLFSNVNRN 271
>U34596-1|AAA97605.1| 570|Caenorhabditis elegans SMA-4 protein.
Length = 570
Score = 57.6 bits (133), Expect = 4e-09
Identities = 30/55 (54%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Frame = +3
Query: 327 WCSISYYELNTRVGETFHAS---QPXITVDGFTDP--SNSERFCLGLLSNVNRNE 476
WCSI YYEL+T +GETF S + VDG DP N R CLG LSNV+R E
Sbjct: 350 WCSIIYYELDTPIGETFKVSARDHGKVIVDGGMDPHGENEGRLCLGALSNVHRTE 404
>U00066-5|AAA50739.2| 565|Caenorhabditis elegans Small protein 4,
isoform a protein.
Length = 565
Score = 57.6 bits (133), Expect = 4e-09
Identities = 30/55 (54%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Frame = +3
Query: 327 WCSISYYELNTRVGETFHAS---QPXITVDGFTDP--SNSERFCLGLLSNVNRNE 476
WCSI YYEL+T +GETF S + VDG DP N R CLG LSNV+R E
Sbjct: 345 WCSIIYYELDTPIGETFKVSARDHGKVIVDGGMDPHGENEGRLCLGALSNVHRTE 399
>Z81055-6|CAB02890.3| 287|Caenorhabditis elegans Hypothetical
protein F01G10.8 protein.
Length = 287
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +3
Query: 327 WCSISYYELNTRVGETFHASQPXITVDGFTDPSNSERFCL 446
WC+I YYEL R+G+ F A P IT+DG T S+ R L
Sbjct: 90 WCTIFYYELTVRLGKAFEAKVPTITIDGATGASDECRMSL 129
>AF190910-1|AAF03892.1| 287|Caenorhabditis elegans Smad protein
protein.
Length = 287
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +3
Query: 327 WCSISYYELNTRVGETFHASQPXITVDGFTDPSNSERFCL 446
WC+I YYEL R+G+ F A P IT+DG T S+ R L
Sbjct: 90 WCTIFYYELTVRLGKAFEAKVPTITIDGATGASDECRMSL 129
>Z75546-1|CAA99889.1| 546|Caenorhabditis elegans Hypothetical
protein R05D11.1 protein.
Length = 546
Score = 40.7 bits (91), Expect = 5e-04
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Frame = +3
Query: 216 DGDPMDHNDNMNLTRLSPSP-GGLAXEASX---VLYHEPAFWCSISYYELNTRVGETFHA 383
DG P+ + L R S G L+ +A V Y E W + YYE T +GE
Sbjct: 308 DGRPITPIEPRPLYRSSALELGDLSRQAGIYECVEYEESPSWLKLIYYEEGTMIGEKADV 367
Query: 384 SQPXITVDGF----TDPSNSERFCLGLLSNVNRN 473
+DGF TD RF LG +N NR+
Sbjct: 368 EGHHCLIDGFTASRTDSETRSRFSLGWYNNPNRS 401
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 327 WCSISYYELNTRVGETFHASQPXITVD-GFTDPSNSERFCLGLLSNVNRNEV 479
W +I YYE N ++GE S+ VD GF N R+ LGL N R V
Sbjct: 561 WGTIVYYEKNLQIGEK-KCSRGNFHVDGGFICSEN--RYSLGLEPNPIREPV 609
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 327 WCSISYYELNTRVGETFHASQPXITVD-GFTDPSNSERFCLGLLSNVNRNEV 479
W +I YYE N ++GE S+ VD GF N R+ LGL N R V
Sbjct: 657 WGTIVYYEKNLQIGEK-KCSRGNFHVDGGFICSEN--RYSLGLEPNPIREPV 705
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 327 WCSISYYELNTRVGETFHASQPXITVD-GFTDPSNSERFCLGLLSNVNRNEV 479
W +I YYE N ++GE S+ VD GF N R+ LGL N R V
Sbjct: 629 WGTIVYYEKNLQIGEK-KCSRGNFHVDGGFICSEN--RYSLGLEPNPIREPV 677
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 327 WCSISYYELNTRVGETFHASQPXITVD-GFTDPSNSERFCLGLLSNVNRNEV 479
W +I YYE N ++GE S+ VD GF N R+ LGL N R V
Sbjct: 561 WGTIVYYEKNLQIGEK-KCSRGNFHVDGGFICSEN--RYSLGLEPNPIREPV 609
>Z83731-4|CAB06021.2| 471|Caenorhabditis elegans Hypothetical
protein M04C9.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 18 EVRAPPPYADYHQPILHEHPDVAMQSGTGHSAL 116
E+R+ PPY DY + P++ ++S + +S +
Sbjct: 156 EIRSKPPYTDYVSTRWYRAPEILLRSTSYNSPI 188
>AM498742-1|CAM58448.1| 471|Caenorhabditis elegans MAP kinase
protein.
Length = 471
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 18 EVRAPPPYADYHQPILHEHPDVAMQSGTGHSAL 116
E+R+ PPY DY + P++ ++S + +S +
Sbjct: 156 EIRSKPPYTDYVSTRWYRAPEILLRSTSYNSPI 188
>U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 9 protein.
Length = 703
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 48 YHQPILHEHPDVAMQSGTGHSALYLEATLAQHVPG 152
+ QPILHE Q+G G + + QH G
Sbjct: 225 FQQPILHEPIQGMAQNGFGQQVFFTQMQNQQHPQG 259
>U00066-6|ABC71810.1| 189|Caenorhabditis elegans Small protein 4,
isoform b protein.
Length = 189
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 426 NSERFCLGLLSNVNRNE 476
N R CLG LSNV+R E
Sbjct: 7 NEGRLCLGALSNVHRTE 23
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,055,300
Number of Sequences: 27780
Number of extensions: 199684
Number of successful extensions: 550
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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