Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1332
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    29   5.8  
01_06_1749 - 39636951-39638102                                         29   5.8  
01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206           29   5.8  

>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 240 RCNYTRDLRTYISRWVAHLRCRCL 311
           RC  T  LR    RW  HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 257 SSIVTTAAPPFKPKRITA 204
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
          Length = 584

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 150 SLPPVITQIKKCGPLHYFEFEL*LKFSSR--FSNLLKACIICMYLIKS 13
           S+PP+      CGP ++F  +    F+    + +LLK  +IC  ++ S
Sbjct: 199 SIPPLPLPPHLCGPTYFFHIDTAFSFAGTIFWVDLLKGILICDDILSS 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,867,567
Number of Sequences: 37544
Number of extensions: 422072
Number of successful extensions: 797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)