Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1332
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans N...    31   0.98 
AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical ...    28   9.1  

>AF024493-10|AAK68346.1|  232|Caenorhabditis elegans C. elegans
           NFYC-1 protein protein.
          Length = 232

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 812 DDPRAYVL-SDAPVFQFQAGTNFSNEIITYSWHGTTEKR 699
           DD R +++ SDAP+F  QA   F  E+    W   +E R
Sbjct: 123 DDVRNFMIASDAPIFMAQAAEFFIEEMTAMGWQYVSEAR 161


>AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.12 protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 184 LCLFCREAVMRFGLKGGAAVVTILETLELISQG 282
           +C   R AV++FG+     +V I+ET+  +S G
Sbjct: 131 VCSSLRTAVVKFGMHFDKVMVAIIETMVFLSLG 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,297,086
Number of Sequences: 27780
Number of extensions: 384423
Number of successful extensions: 749
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)