Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1331
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.33
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 0.76
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 1.0
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 26 2.3
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 26 2.3
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 25 4.1
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide... 25 4.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 4.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 4.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 4.1
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.4
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 5.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.1
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 25 7.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.1
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.1
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 24 9.4
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 24 9.4
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 24 9.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 9.4
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo... 24 9.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.33
Identities = 21/80 (26%), Positives = 29/80 (36%)
Frame = -3
Query: 258 PNPQGPGESPRRSYDQPKDQPTVWTMTPARTAEIGPSAL*THWGWDAPRPGHEGQPATDS 79
P P G P S P +P+V + + P P+P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS-VAAPPVPV 1135
Query: 78 QRRAPPLPEPKAASQPVHTP 19
APP+P+P A+ PV P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAP 1155
Score = 27.5 bits (58), Expect = 1.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 117 PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
P+P P + APP+P+P A+ PV P
Sbjct: 1143 PKPS-VAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 117 PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
P+P G P APP+P P A PV P
Sbjct: 1201 PKPS-VGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -3
Query: 117 PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPPQ 13
P+P P PP+P+P A PV P +
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSE 1196
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 117 PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
P+P G P APP+P+P PV P
Sbjct: 1182 PKPA-AGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 117 PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTP 19
P P P +APP+P P + + V TP
Sbjct: 1220 PTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = -3
Query: 114 RPGHEGQPATDSQRRAPP-----LPEPKAASQPVHTPPQ 13
RP ++G+ A+ + APP LP S P PP+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPK 988
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 93 PATDSQRRAPPLPEPKAASQPVHTP 19
P +APP+P P A + P+ P
Sbjct: 1013 PVPKLSSKAPPVPLPSADAPPIPVP 1037
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 0.76
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 258 PNPQGPGESPRRSYDQPKDQPTVWTMTPARTA 163
PNPQG + P+DQP+ P RTA
Sbjct: 299 PNPQGNVGAQSLQSMSPQDQPSTQQQQPQRTA 330
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.5 bits (58), Expect = 1.0
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -2
Query: 361 AVGSAVIRCRNSPKQPCPVSTCVSRKVRRPLSRFTQSTRTGRIASTVLRPAEGSANRLDH 182
A S V KQ PVST + RRP S T ++TG + + + + G R DH
Sbjct: 24 ASSSGVNGTNGGMKQVSPVSTARTSIARRPPS--TVGSQTGSLVNAPPKRSSG-IERFDH 80
Query: 181 DSST 170
+ T
Sbjct: 81 VTGT 84
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 132 WGWDAPRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPPQRR 7
W + P+P + T QR+ LPE + S TPP+ R
Sbjct: 166 WQFVRPQPTFDDLQLTPLQRKLMGLPEGGSTSGKHLTPPRYR 207
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 392 VQVATTMVALCRRLGCDPVQELTEATMPSEHLREPESEA 276
V+ + V L R++G + Q++ E T H PESEA
Sbjct: 220 VKPGSIRVNLIRKMGHEAKQQVNEYTAIPLHEMNPESEA 258
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 410 ERMLCRVQVATTMVALCRRLGCDPVQELTEA 318
ER+L R QV + + RRLGC + EA
Sbjct: 343 ERILLRPQVISNHPEIIRRLGCIAMNTPVEA 373
>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -1
Query: 329 LTEATMPSEHLREPESEASSVTIHPIHKDRANRLDGPTTSRRISQPS 189
+ EA E L P ++A+ IH D +++ GP ++++++ S
Sbjct: 142 MKEAEAFPEPLFTPSTKAAEGHDENIHPDEVSKIVGPELAKQVAETS 188
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 117 PRPGHEGQPATDSQRRAPPLPEPKAASQPVHTPP 16
P P P+T R+ PPL +A S P PP
Sbjct: 362 PPPPPRSAPSTG--RQPPPLSSSRAVSNPPAPPP 393
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -3
Query: 117 PRPGHEGQ-PATDSQRRAPPLPEPKAASQPVHTPP 16
PR G P R APP P P++A PP
Sbjct: 343 PRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 4.1
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 298 RCS---LGMVASVSSCTGSQPSRRQSATIVVATWTRQSIRSSSAPHGRGG 438
RCS LG ++VS+ G +P+ ++ +AT +R + SS+P + G
Sbjct: 1577 RCSDSLLGEESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPG 1626
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 4.1
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 298 RCS---LGMVASVSSCTGSQPSRRQSATIVVATWTRQSIRSSSAPHGRGG 438
RCS LG ++VS+ G +P+ ++ +AT +R + SS+P + G
Sbjct: 1577 RCSDSLLGEESTVSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPG 1626
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 98 PSCPGRGASQPQCVQSAEGPISAVRAGVMVQ 190
PS P R S+P + + P VR VM Q
Sbjct: 120 PSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQ 150
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 36 GTPPWVLEAEALAADYQWRADLRARDVARPSPSVFRARRDQSRR 167
G PWV E A A+Y R + R + + V + + + RR
Sbjct: 898 GKQPWVDEINARRANYSTRLEEYQRQINSYNVRVAQIKSEHQRR 941
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 335 QELTEATMPSEHLREPESEASSVTIHPIH-KDRANRLDGPTTSRRISQPSGP 183
Q+ + ++ + EP ASSVT+ P + N+++ +++ PS P
Sbjct: 931 QKFDDDAWANKPVTEPPVRASSVTVEPARVTESMNKMNISEEAKKPEAPSRP 982
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -2
Query: 253 STRTGRIASTVLRPAEGSANRLDHD-----SSTDRRDWSLRALNTL 131
+ T I +++LR G N+L+H ++ D SLR L T+
Sbjct: 138 ANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGHLDRSLRTLKTM 183
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 105 ARDVARPSPSVFRARRDQSRRSVLESWSRRLADPSAGRRT 224
A + A + RAR+ RS WS R+ P+ G T
Sbjct: 232 ASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNT 271
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 138 THWGWDAPRPGHEGQPATDSQRRAPPLP 55
T W AP PG DS + PP P
Sbjct: 963 TPGAWAAPTPGGWDDEEGDSPKYVPPSP 990
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = +3
Query: 105 ARDVAR--PSPSV---FRARRDQSRRSVLESWSRR 194
AR++A P P V FR+R+ Q RRS + W+ R
Sbjct: 1386 AREIATKTPLPIVDLKFRSRQLQRRRSQIGEWAER 1420
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +3
Query: 129 PSVFRARRDQSRRSVLESWSRRLADPSAGR------RTVEAIRPVLVDWVNRDRGR 278
PS + + S ++LES R ++PS R +TVE+++ + V D G+
Sbjct: 827 PSSVMGKENASEDTILESNFRNHSNPSVRRSNLRVGKTVESVQNTKLKSVENDSGK 882
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 95 SPPLIVSGERLRFQNPRRRPSQYTRRL 15
+PP V RL ++PRR P QY R+
Sbjct: 1262 APPGAVMARRLMTKDPRREP-QYGERV 1287
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -2
Query: 379 PQWWHSAVGSAVIRCRNSPKQPCPVSTCVSRKVRRPL 269
P WW+S SA +Q C + S++ R L
Sbjct: 1554 PGWWYSVESSATPHLLKQFEQACQQALSSSQRTRARL 1590
>SPAP27G11.07c |||serine/threonine protein kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 238
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -1
Query: 428 PCGADDERMLCRVQVATTMVALCRRLGCD 342
PC D R +C ++ ++ L +R+G +
Sbjct: 107 PCVRDYIREICECEIEKKLIPLMKRIGSE 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,588
Number of Sequences: 5004
Number of extensions: 47618
Number of successful extensions: 190
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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