Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1330
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    35   0.015
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    32   0.10 
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    28   1.7  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   3.0  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   5.2  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    26   5.2  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +3

Query: 552 NASRQCVKCGAPA--DWYCSRCAITPYCSQTCQTRDWTERHKSVCHYLAPLKTAG 710
           N +R C  C         C+ C I  YCS+ CQ  DW   HK  C  L   K  G
Sbjct: 44  NLTRTCSTCTEEKVKTQRCAACKIIHYCSKGCQKADW-PFHKLECKALQASKQNG 97


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 540 GLERNASRQCVKCGAPADWY--CSRCAITPYCSQTCQTRDWTERHKSVCHYLAPLKTAGG 713
           G+ R A+  C K    +  +  C RC  T YCS+ CQ + W   H   C  +   K    
Sbjct: 476 GIRRCANLLCNKWEEHSRQFAKCRRCRRTKYCSKECQHQAW-PGHSRWCRVIH--KDGRN 532

Query: 714 FEAEATSSKSVSNS 755
            + E++   SV+ S
Sbjct: 533 SKRESSKINSVTES 546


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -1

Query: 607 REQYQSAGAPHFTHWREAFRSSPGVFSDSEPAPANEGSTSAESVSLALFLTTMRPSGRTD 428
           + Q Q A A      +    ++ G+F  + P  +  G  S +  S  LF  + +PSG T 
Sbjct: 139 QSQTQPAQANTSLFGQSNIGTTGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQPSGSTG 198

Query: 427 LP-ADECGATCLFSACRR 377
              ++    T  FSA ++
Sbjct: 199 FGLSNNTQTTPFFSAAQQ 216


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 381 RHAEKRQVAPHSS--AGRSVLPDGRIVVRNNANETDSAEVE 497
           R     Q++P SS   G   L +G ++ RN+ NET SA V+
Sbjct: 445 REGTSGQLSPTSSIMGGNPSLFNGSVLSRNSVNETGSAIVD 485


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 27  TASEAKLAMMKMNGSEPLNLKISI-AHKTIRKTQHDNKDRN 146
           T++    ++   NG +P+N K+S  A KT  ++   NK RN
Sbjct: 464 TSNPTSASVTSQNGQQPINTKLSANAAKTNYQSYLTNKARN 504


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 102 HKTIRKTQHDNKDRNYSTSRNGHCSRDEASSISSKGWNMRNL 227
           H  +    H+N   + + S NGHC    +  + ++ W+  +L
Sbjct: 545 HSQLTLQGHNNSVISVAVSPNGHCFATGSGDLRARIWSYEDL 586


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 564 QCVKCGAP--AD-WYCSRCAITPYCSQTC 641
           +C+ CGAP  +D +YCS C    Y    C
Sbjct: 57  RCIICGAPGVSDCYYCSECTRMEYDRDGC 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,861
Number of Sequences: 5004
Number of extensions: 45889
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)