Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1330
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    27   0.26 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   1.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 549 VLVLVFLAILNRLQRMKVQPQQNPFHW--RCSSRRCDRRAGRIYRQTNAEPPVSSQHVAG 376
           V  L+  A+L ++Q M ++      +W    +S   + RAGR    T ++  +SSQ + G
Sbjct: 327 VFALILTALLRKMQEMSIEVP----YWISTTTSFVLNNRAGRFLILTESDTKLSSQGILG 382


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 54  MKMNGSEPLNLKISIAHKTIRKTQHDNKDRNYSTSRNGHCSRD 182
           +K +G+E  + K + +  ++R   HD +  +   SR   CSRD
Sbjct: 200 IKKSGNE--SKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRD 240


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 87  KISIAHKTIRKTQHDNKDRNYSTSRNGHCSRDEASSISSK 206
           K + +  ++R   HD +  +   SR   CSRD       K
Sbjct: 209 KYATSSNSLRSRTHDFQHTSSRYSRERSCSRDRNREYKEK 248


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 117 KTQHDNKDRNYSTSRNGHCS 176
           K + DN D +++T  N H S
Sbjct: 225 KHESDNSDYSHTTDENRHSS 244


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 580 PHFTHWREAFRSSPGVFSDSE 518
           PHF  W +  R  PG    SE
Sbjct: 362 PHFITWYKDGRQLPGTGRQSE 382


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 580 PHFTHWREAFRSSPGVFSDSE 518
           PHF  W +  R  PG    SE
Sbjct: 362 PHFITWYKDGRQLPGTGRQSE 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,234
Number of Sequences: 438
Number of extensions: 3279
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)