Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1327
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   3.6  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    27   3.6  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   6.3  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 620 LDTAIKELGGYVNK*NDQFLKLN 688
           L++   ELGG +NK N+QF++L+
Sbjct: 61  LESGEVELGGVINKVNEQFIQLS 83


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 40  NHLFQLRCQYDTLVECQNTNKNVNSTTGSKKSHSPEKNRRNKL 168
           N   Q+ CQ  ++ +  ++  ++NST  S   H  + N  N++
Sbjct: 68  NDACQIACQESSVPDLSSSCDSINSTVESDAGHVVDSNSFNRI 110


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 62  VSMTHLLNVKIQIKMLTLPPVPKKATVLR--RTGETNS 169
           VS+T +++V       TLPP P  A  LR  R G T+S
Sbjct: 357 VSLTDIISVLYAHMKGTLPPAPHSAPSLRHGRRGSTSS 394


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 461 LHAHSYPRIAPCPENESVGP-AKRCESVLRDKTKSDLNALQL 583
           + AHS+P+I     N +VGP  K     + D  K D + L+L
Sbjct: 688 VQAHSFPKIDSFILNSTVGPRVKIVLETIEDSFKIDSHLLEL 729


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 416 WEDQRSPFCWFMNNHLHAHSYPRIAPCPENES 511
           W D RS     +N H    S P + P P  +S
Sbjct: 8   WSDGRSDTWPNVNGHSRTRSVPSLKPLPHQDS 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,144
Number of Sequences: 5004
Number of extensions: 47523
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)