Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1327
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292     31   0.70 
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     30   1.6  
03_06_0738 - 35883405-35884006,35884474-35884492                       29   4.9  

>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
          Length = 222

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = +2

Query: 392 SHITYPRHWEDQRSPFCWFMNNHLHAHSYPRIAPCPENESVGPAKRCESVLRDKTKSDLN 571
           +H+ Y RH  D R+   WF  + +   S P+  P P    +G  +RC   L     SD  
Sbjct: 70  AHVEY-RH-ADGRNWEKWFSRSDISDFSKPKAPPPPPPRDIGDCQRCSVALCAGGFSDAT 127

Query: 572 ALQ 580
            LQ
Sbjct: 128 FLQ 130


>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 425 QRSPFCWFMNNHLHAHSYPRIAPCPENESVGPAKRCESVL 544
           + +P  WFM+N     +   + PC  N+  G  K+ +S+L
Sbjct: 665 EEAPIEWFMHNKKLCGTVKALPPCDLNQKGGQGKKFKSIL 704


>03_06_0738 - 35883405-35884006,35884474-35884492
          Length = 206

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
 Frame = +2

Query: 461 LHAHSYPRIAPCPENESVGPA------KRCESVLRDKTKSDLNALQLK-FRLEKS 604
           + AH  P I PC   ES   A      K C   + D    D+N    K FRL+++
Sbjct: 63  VRAHGIPAIRPCDAEESAAHALIAVIKKECRVEIEDTNWLDMNRYHAKVFRLKRA 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,627
Number of Sequences: 37544
Number of extensions: 282247
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)