Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1326
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               26   0.47 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   4.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.7  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 360 CLDRCLLTSVSTLMFTYYQVSRF*CFCYDS*FDADML-YVKNVFKKNYDSGSSE 518
           C++ CL   ++ +    + VS+F  +  D+  D D+   ++ + ++  D+  +E
Sbjct: 55  CIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIRKIIRQCVDNAKNE 108


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 607 IPSFKAEISKIVHSCINMA 551
           IP+++AE+ K +  C  +A
Sbjct: 101 IPAYRAEVQKAISECKGIA 119


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 668 DLLDFK*RHLAEVSII 621
           D+ D+K RH+ E++I+
Sbjct: 369 DISDYKFRHITEITIL 384


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 489 KKNYDSGSSELSLLFIYIVNSAIFIQLCTILLISALKD 602
           K+ YD   S  + L   +VN++  +++C  L +S L D
Sbjct: 30  KRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLID 67


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 489 KKNYDSGSSELSLLFIYIVNSAIFIQLCTILLISALKD 602
           K+ YD   S  + L   +VN++  +++C  L +S L D
Sbjct: 30  KRLYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLID 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,658
Number of Sequences: 438
Number of extensions: 3309
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)