Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1325
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 29 0.52
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 29 0.69
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 28 1.2
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 27 2.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.8
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 27 3.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 4.9
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 26 4.9
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 26 6.4
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 25 8.5
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 8.5
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 29.5 bits (63), Expect = 0.52
Identities = 18/82 (21%), Positives = 37/82 (45%)
Frame = -1
Query: 717 PASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQV 538
P+S S FCS +S+ C+++ T + L + N + F + + L
Sbjct: 50 PSSDISEFCSLIDFISQTCNYYHDVTADFPSELIELLQKNHTIFPFELCEKIVL-----C 104
Query: 537 ILMFCPSTTLASLVILACTFPV 472
+++ T ++ + +L C FP+
Sbjct: 105 LVLLKNKTVISPITLLQCFFPL 126
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 29.1 bits (62), Expect = 0.69
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -1
Query: 705 RSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLY---FHVTSEYGLPINLQ 541
++ FC + C F+ R+PS L V + +FL F ++ E + INLQ
Sbjct: 12 KNVFCREDQIKKLSCLLFNKDCRVPSIVLYGVASTAKTFLLRTAFDLSKEENVWINLQ 69
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 557 KPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERAD 712
KP+ + WK KKD +D T V G +L +N+ + + V L+ +R +
Sbjct: 375 KPFEKQFWKIKKDLMD--TVVFFQKGKFYELYENDAAIGHQVFSLKLTDRVN 424
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 148 SSYECPKLVNDCSGHRAHPRTGQL 219
S C K NDCSGH + GQL
Sbjct: 292 SEEACSKATNDCSGHGRCSKYGQL 315
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 1.2
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -1
Query: 690 STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTS-EYGLPINLQVILMFCPST 514
++STV++ SS T ST +TS + NSS T+ PI +L ST
Sbjct: 3289 TSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLN--SST 3346
Query: 513 TLASLVILACTFPVTIQALI 454
+ S IL + PVT +++
Sbjct: 3347 AITSSSILNSSTPVTSSSVL 3366
Score = 25.4 bits (53), Expect = 8.5
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = -1
Query: 690 STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGL----PINLQVILMFC 523
++STV++ SS ST +TS + NSS +TS GL PI +L
Sbjct: 901 TSSTVVNSSTPITSSTALNTSTPITSSSVLNSS---TPITSSTGLNTSTPITSSSVLN-- 955
Query: 522 PSTTLASLVILACTFPVT 469
ST + S +L + P+T
Sbjct: 956 SSTPITSSTVLNSSTPIT 973
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 494 MTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSA-VLGSRVQLEKNEQGL 670
+T + +++ Q I + +P+ +W +E + +S V+G R++L+K + GL
Sbjct: 108 VTGEGGLMDAQLITAEADNLTRPHW-TSWTENSEEFPSSLVMSTGVIGQRLKLDKIQSGL 166
Query: 671 DNTV 682
++ V
Sbjct: 167 EHAV 170
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/37 (32%), Positives = 26/37 (70%)
Frame = -1
Query: 702 SAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSS 592
SA +TST +S +++ + LP+++++S PLS+++
Sbjct: 393 SANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSAN 429
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/37 (32%), Positives = 26/37 (70%)
Frame = -1
Query: 702 SAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSS 592
SA +TST +S +++ + LP+++++S PLS+++
Sbjct: 507 SANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSAN 543
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 140 ACGVLTSAQNSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLAVPLDSFEIV 301
A ++T A ++ P T+ T ++V++ + ++G PF + L++P E+V
Sbjct: 151 AMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGWPF--SAALSIPFILLELV 202
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 307 EEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQLHVRPQEPNGTYQSLDG 471
++Q+ S+ +PQ Q P Q Q + + RQLH Q+P T S +G
Sbjct: 167 QQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNG 221
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 522 PSTTLASLVILACTFPVTIQALICPVW 442
PST LAS I + P +I+ + P W
Sbjct: 294 PSTILASQTIFSEEHPSSIEPFVAPYW 320
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 341 LKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTG 451
+KE EL G G SNEDD+ + C ++ G
Sbjct: 11 MKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG 47
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -1
Query: 585 YFHVTSEYG-LPINLQVILMFCPSTTLASLVILACTFPVTIQ--ALICPVWF 439
Y HV S Y + + L +I+ + + V++A F I + ICP+WF
Sbjct: 247 YIHVFSFYADMLMTLVLIISAYIALNAVASVVIAFVFLSLIFFISFICPIWF 298
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 434 LKNQTGHIKAWMVTGNVHAKMTKDANVVE 520
+K H +AW G +H + ++ VVE
Sbjct: 321 VKENPQHFEAWKWLGRIHTLLGNESRVVE 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,334
Number of Sequences: 5004
Number of extensions: 47515
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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