Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1322
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    31   0.63 
10_06_0019 - 9688395-9688867,9688905-9689070                           30   1.5  
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710...    30   1.5  
04_04_1329 - 32691667-32691819,32691920-32692081                       29   1.9  
01_06_1749 - 39636951-39638102                                         28   4.4  
04_03_0797 + 19744815-19745030,19745190-19745273,19745375-197454...    28   5.9  
10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408     27   7.7  
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453...    27   7.7  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/44 (43%), Positives = 20/44 (45%)
 Frame = +1

Query: 124 KLRIKDKTSGAFERCTGVRISLAGTNFSNEIRTQQMFTIDFHDE 255
           KL  KD   G   RCTGV I   G N   +I T      DFH E
Sbjct: 147 KLSKKDG-GGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>10_06_0019 - 9688395-9688867,9688905-9689070
          Length = 212

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 341 VRTHKRSYHQ*LRKL*FCGF*FLLHDVIPSSWKS 240
           VR++  S+H    K  +C F F+ HDV+ S W S
Sbjct: 107 VRSYATSFHG-TGKAEYCCFTFIRHDVLASQWSS 139


>07_03_1041 +
           23468867-23469215,23469231-23469348,23470920-23471041,
           23471074-23471532,23474675-23474949,23475179-23475315,
           23475353-23475405,23475456-23475516,23475606-23475707,
           23476380-23476488,23476568-23476693,23476986-23477037,
           23477236-23477317,23477395-23477488,23478166-23478262,
           23478605-23478698,23479458-23479530,23480198-23480371,
           23480526-23480648,23481396-23481533,23482270-23482446
          Length = 1004

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 493 LEPIDIHNANAPHTLRYSSKVSV*SQRLPRPSNRNASLLHGRNRR 359
           ++P  IH+A+  H     S  +V  Q  PRP   + +LL  RN R
Sbjct: 408 IDPTKIHSADLLHVWSMPSTANVSQQEAPRPL-EHVNLLAARNER 451


>04_04_1329 - 32691667-32691819,32691920-32692081
          Length = 104

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -3

Query: 209 LEKLVPASEIRTPVHRSNAPDVL----SFMRSLHYE 114
           L+ L+P S+ R   HR +A  VL    S++RSLH E
Sbjct: 39  LQALLPESQARNGAHRGSAARVLQETCSYIRSLHQE 74


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 428 SIVTTAAPPFKPKRITASRQKQAGR 354
           S+ + AAPPF P RIT+      GR
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGR 189


>04_03_0797 +
           19744815-19745030,19745190-19745273,19745375-19745473,
           19745588-19745695,19747332-19747700
          Length = 291

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 370 CREAVMRFGLKGGAAVVTILRP*NYISRCVAHLRCGC 480
           CREA+   G+KG   V+++ R  N  +  +  +R GC
Sbjct: 86  CREAMEEAGVKGNINVMSLYRN-NVTTITITDIRAGC 121


>10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408
          Length = 261

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -3

Query: 422 VTTAAPPFKPKRI-TASRQKQAGRWHLPVRTHKRSYHQ*LRKL*FCGF*FLLHDVIPSSW 246
           V  + P  KP R+ T  R+     W L    H+      LR +   G   + H VIP++W
Sbjct: 190 VMESLPSGKPTRVWTPMRRSWGSIWRLDAN-HRLQGPFSLRMVSESGQTVIAHQVIPANW 248

Query: 245 KSIVN 231
           ++  N
Sbjct: 249 RANTN 253


>05_04_0438 +
           21244735-21244782,21245089-21245274,21245307-21245384,
           21245385-21245678,21246137-21246262,21246935-21247168,
           21247534-21248061
          Length = 497

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 447 DIVLRSQYSHNGCPALQTETH 385
           D++ RS   H   P  QTETH
Sbjct: 477 DVIRRSASGHEAAPPFQTETH 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,521
Number of Sequences: 37544
Number of extensions: 349746
Number of successful extensions: 724
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)