Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1322
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    31   0.75 
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    31   0.75 
Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical pr...    28   5.3  
L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 391 NASLLHGRNRRGGGTYPCG 335
           +ASL+ GRN+R GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 391 NASLLHGRNRRGGGTYPCG 335
           +ASL+ GRN+R GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>Z81550-3|CAD44141.1|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2b protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 379 LHGRNRRGGGTYPCGLTRGPTTSNYANYNFAGFDFYCT 266
           + G    G G YP  + +GP      NY    F F+ T
Sbjct: 124 VEGGGNMGAGIYPNLVNKGPIVMVSINYRLGPFGFFST 161


>Z81550-2|CAB04478.2|  548|Caenorhabditis elegans Hypothetical
           protein F55F3.2a protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 379 LHGRNRRGGGTYPCGLTRGPTTSNYANYNFAGFDFYCT 266
           + G    G G YP  + +GP      NY    F F+ T
Sbjct: 124 VEGGGNMGAGIYPNLVNKGPIVMVSINYRLGPFGFFST 161


>L16685-3|AAA28169.3|  321|Caenorhabditis elegans Hypothetical
           protein ZC21.3 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 460 PHTLRYSSKVSV*SQRLPRPSNRNASLLHGRNRRGGGTYPCGLTRGPTTSNYAN 299
           P T +Y+S + V +   P+ SN+N  L    N +G      G+    TT  Y N
Sbjct: 148 PSTAQYNSVLGV-NAGFPQSSNQNQVLRDQSNNQGYMNNNQGMYNTQTTQGYGN 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,185
Number of Sequences: 27780
Number of extensions: 296975
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)