Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1321
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    31   0.17 
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    28   1.2  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    26   6.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   8.4  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.4  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   8.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   8.4  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
 Frame = +2

Query: 533 SLIVNGFKYNQVD--------DHVVCEYCEAEIKNWSEDQCIEYAHVTLSPYCAYA 676
           +L   GF YN +         D+V C  C     +W +D      H+T SP C +A
Sbjct: 43  TLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSCPWA 98


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 1   DDSVVSMCVDNAFAYTTDDLLKNISFSHSKCAPFKLQNYTVLKRLSNGFIDKSVDV 168
           D ++  + +D       +D+L +I     K  PF L+    ++ L+ G IDK + +
Sbjct: 250 DQTIKDVMLDLLGTNPPEDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISI 305


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 575 HVVCEYCEAEIKNWSEDQCIEYAHVTLSPYCAYANKIAEHE 697
           H +C  C   +   SED   + ++  +SP C+   +  + E
Sbjct: 764 HFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTE 804


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 106 LQNYTVLKRLSNGFIDKSVDVGSISELQKFNFKINRLTSYISNI 237
           L N T L    N F+   + +  +S+L+  NF  N L+   S I
Sbjct: 524 LVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKI 567


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 114 LHRFEAVEQRVYRQVC 161
           LH FE    RVY Q+C
Sbjct: 180 LHDFETTSNRVYSQIC 195


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -2

Query: 221 LVSRFILKLNFCNSLIEPTSTDLSINPLLNRFKTV*FCSLKGAHLE*LKEIFF 63
           LV +++L   FC S+++    ++++NP ++ +     C L       LK++ F
Sbjct: 268 LVYKWVLNF-FCKSVVKQAEAEVAVNP-ISAYPLAKVCLLLQTQNADLKDLLF 318


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 250 FVVLEHNLSIVHVINAETKTKLGHINVSLNQNDPNVL 360
           FVVL+ N SI+HV   +  TK+    +S++    ++L
Sbjct: 689 FVVLD-NKSIIHVYAGDLTTKIPSAQLSIDNTSRSLL 724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,946
Number of Sequences: 5004
Number of extensions: 54767
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)