Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1317
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0325 + 33146715-33148601                                         29   3.3  
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264...    28   7.6  
07_01_0632 + 4729426-4731300                                           28   10.0 
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579...    28   10.0 

>03_06_0325 + 33146715-33148601
          Length = 628

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 212 ITLKLNKAMNISKKFFYFYCLDGRTSSQPTW 120
           + L +  AMN++     +  +DGRT+  P W
Sbjct: 101 VVLAMGAAMNLAGYLMIYLAIDGRTARPPVW 131


>05_07_0181 - 28225396-28225587,28226009-28226068,28226150-28226416,
            28227167-28227232,28228164-28228963,28229565-28229673,
            28230391-28232097
          Length = 1066

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 309  KIYCYNSKAPRITWQILCNKLLFP*NYLQFLP*HK*LMA**LSIVNYLDMWVKSQQFIAS 488
            KIYCY+ +  RI W  +        +Y++FL     + A   S  N L +W  +Q   + 
Sbjct: 911  KIYCYDLRNTRIPWCTISGHGKAV-SYVRFLDPETLISA---STDNTLKIWDLNQTNSSG 966

Query: 489  QSTDKC 506
             STD C
Sbjct: 967  LSTDAC 972


>07_01_0632 + 4729426-4731300
          Length = 624

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 212 ITLKLNKAMNISKKFFYFYCLDGRTSSQPTW 120
           + L +  AMN+S     +  + GRT++ P W
Sbjct: 110 VVLAIGAAMNLSGYLMVYLAVAGRTAAPPVW 140


>02_03_0052 -
           14456925-14457176,14457277-14457437,14457843-14457914,
           14458105-14458221,14458310-14458322,14458917-14458946,
           14459837-14460010,14460276-14460417,14460731-14460792,
           14461047-14461643
          Length = 539

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 212 ITLKLNKAMNISKKFFYFYCLDGRTSSQPTWC*VVTGAHRHLQRKCVTH 66
           I++ +  A  +SK        DGR + +  W    T  H +LQ  C  H
Sbjct: 477 ISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATHNHIYLQSLCTFH 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,782,173
Number of Sequences: 37544
Number of extensions: 342829
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)