Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1314
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 116 4e-27
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 48 1e-06
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 43 4e-05
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 41 1e-04
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 39 8e-04
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 29 0.49
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 29 0.64
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 28 1.1
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 27 2.0
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 2.6
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 3.4
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 4.5
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 26 6.0
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 6.0
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 6.0
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 26 6.0
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 7.9
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 7.9
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 7.9
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 7.9
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 7.9
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 116 bits (278), Expect = 4e-27
Identities = 62/184 (33%), Positives = 102/184 (55%), Gaps = 5/184 (2%)
Frame = +3
Query: 156 LLKLHTAEQIAFEVDLDDLHEMNEDLTEA---VKQNTRRYTNMVSDVVYEMLPDYKFKEV 326
L K+ E VDL+DL+E + T+ ++ N +R+ + S ++P +
Sbjct: 60 LQKISNRESNVINVDLNDLYEFDPSDTQLLHNIESNAKRFVELFSQCADALMPPPTVEIN 119
Query: 327 VAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNR-YPPELIRRFEVYFKDLSTSKS-VPIR 500
+ LDV ++ R+ RN I DP ++ +PPEL R +++YF+ ++ +K +R
Sbjct: 120 YRNEVLDVIMQQRVQ---RNENI-----DPEHKGFPPELTRGYDLYFRPVTRNKKPFSVR 171
Query: 501 EVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQLTPTSACTDDD 680
+++ E++G L+TVRGIVTR +DVKP L V Y+C CG E +Q +R P S C D+
Sbjct: 172 DLRGENLGSLLTVRGIVTRTSDVKPSLTVNAYTCDRCGYEVFQEIRQKTFLPMSECPSDE 231
Query: 681 CRLN 692
C+ N
Sbjct: 232 CKKN 235
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 495 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQLTPTSACTD 674
IR+++ + IG+L T+ G VTR ++V+P L T+ C C +A + T + C +
Sbjct: 198 IRDLRTDRIGRLTTITGTVTRTSEVRPELAQGTFICEECHTVVSNVEQAFRYTEPTQCPN 257
Query: 675 DDC 683
+ C
Sbjct: 258 ELC 260
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +3
Query: 405 MRDPRNRYPPELIRR---FEVY-FKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVK 572
M D PPE + ++Y + + K + +R++ I KL++++G+V RCT V
Sbjct: 257 MLDLLGTNPPEDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISIKGLVLRCTPVI 316
Query: 573 PLLVVATYSCSACG 614
P + A + CS CG
Sbjct: 317 PDMKQAFFRCSVCG 330
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 450 FEVYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSA 608
F V F+ V R ++A H+ K++++ GIVTRC+ V+P ++ + + C A
Sbjct: 102 FYVGFRGSFGDHHVNPRTLRAMHLNKMISLEGIVTRCSFVRPKVIKSVHYCEA 154
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 38.7 bits (86), Expect = 8e-04
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 495 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGA 617
+R+++ H+ LV V G+VTR T + P L ++C+ CGA
Sbjct: 299 LRDLRQSHLNCLVRVSGVVTRRTGLFPQLKYIRFTCTKCGA 339
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 489 VPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGA 617
+PIR + A HI KLV V GI+ + + C C A
Sbjct: 130 LPIRNLTASHISKLVRVPGIIIGASTLSCRATALHLVCRNCRA 172
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 29.1 bits (62), Expect = 0.64
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 228 LHSSHVNHPSQLQMLSVLLCATLVSCSAYLKYFFPSSS 115
L +N PS +Q LS L A AY+ FF S++
Sbjct: 321 LRQMRINSPSHVQRLSFLTIAMQAGLDAYIAIFFLSTN 358
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -1
Query: 159 VSCSAYLKYFFPSSSV*QKSTKKFLKDSLSAV 64
V+ LK+ F S S Q ST+KFL ++LSAV
Sbjct: 291 VTYDTLLKHPFGSLSDAQSSTEKFLSNTLSAV 322
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/80 (17%), Positives = 34/80 (42%)
Frame = +3
Query: 216 EMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRI 395
E + + + + ++++ + ++E LP + + + D+Y + + +H
Sbjct: 203 EHKNSIEKKISNVDKPISDLIENDIHESLPALQNPPIQSHSETDLYADEELDSILMHHER 262
Query: 396 PGEMRDPRNRYPPELIRRFE 455
P PR EL+ +FE
Sbjct: 263 PPIPESPRVEEFEELLNQFE 282
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +3
Query: 240 AVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRDPR 419
A+ +++R Y VS + LP + + +++ + HR+ E+ ++R GE
Sbjct: 88 AMSRSSRYY---VSSELKATLPSLDGRRLSKRNAANHASHHRMPDESASYRTRGEYESSS 144
Query: 420 NRYPPELIRRF 452
R P + +RR+
Sbjct: 145 PRVPQKSLRRY 155
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.6
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Frame = +3
Query: 24 SNNIFLTKWQCVITLQIKNLSRTFSWIFVKLMMKEKSILNM-LNNLLKLHTAEQIAFEVD 200
++N+F + QC+ +++ LS+ IF +K L LN+ +++
Sbjct: 274 TSNVFNCRAQCLEYVEVLELSKNLVPIFENTAASDKEALEQALNSFFEIYPIWSTYLN-- 331
Query: 201 LDDLHEMNEDLTEAVKQNTRRYT-NMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIM 371
+D+ E + V R++ + VY L +K ++AK L V +EH I+
Sbjct: 332 -EDIREFWVEENRKVDTRLVRFSFSFRPGAVYTYL-IHKSLNILAKSRL-VEVEHEIL 386
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 183 IAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVA--KDSLD 347
+A + + +LH+ E + V Q Y N +D M+ D K ++V KD LD
Sbjct: 77 LAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISD-KIYDIVMKHKDELD 132
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +3
Query: 327 VAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYFKD 470
+AK S+ + HR MLE NH E ++ N ELI F V+ +D
Sbjct: 314 IAKGSIGFTMVHRAMLEFINHADSNEAKELLN-LTKELIYEF-VHTRD 359
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/78 (21%), Positives = 43/78 (55%)
Frame = +3
Query: 114 LMMKEKSILNMLNNLLKLHTAEQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVY 293
+ +++ +ILNML NL+K + V +D++ + + ++K++ R+Y+++++ ++
Sbjct: 118 MFIQQNNILNMLVNLMK--------YFVHMDNISPVTTN--GSLKESLRKYSSIIAVNIF 167
Query: 294 EMLPDYKFKEVVAKDSLD 347
D K + +D D
Sbjct: 168 SETGDLKKGIAIFQDLSD 185
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 123 KEKSILNMLNNLLKLHTAEQIAFEVDL-DDLHEMNEDLTEAVKQNTRRYTNMV-SDVVYE 296
K +++ LN+ KL ++Q+ E + DDL EMN+ L E ++ Y N V S++
Sbjct: 496 KANIVIDELNSA-KLKLSKQVEEESSMKDDLTEMNQRLKEQIES----YENEVNSEITSR 550
Query: 297 MLPDYK 314
L +++
Sbjct: 551 TLKEFE 556
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 77 ESFKNFFVDFCQTDDE 124
+SF NF VD+C+ D+
Sbjct: 53 QSFANFLVDYCKNQDQ 68
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 553 VTIPRTVTSFPICSALTSLIGTLFDVDKSLKYT 455
V IP+ +S+ + + L +IG LF V ++ T
Sbjct: 79 VHIPKVSSSYSVINTLNGMIGNLFGVKQASTLT 111
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 243 VKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEAR 383
++ N ++ +SD E+LPDY+ + V ++ + E ++L+ R
Sbjct: 998 LESNIDNLSSYISDQNLELLPDYEQRIKVLQELGYIDAERTVLLKGR 1044
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +3
Query: 102 IFVKLMMKEKSILNMLNNLLKLHTAEQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVS 281
I L K K +LN K E+ V+ + ++E+N L E VKQ T ++
Sbjct: 232 IMTFLCEKSKELLNEHAIATKQLEKEEKRSRVNRNRINELNNSLGEIVKQQD-TLTTYLN 290
Query: 282 DVVYEMLPDYKFKEVVAKDSLD 347
D ++ + +++++V K +D
Sbjct: 291 D-YFDSVFVHRYRDVEPKIRVD 311
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.4 bits (53), Expect = 7.9
Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Frame = +3
Query: 84 SRTFSWIFVKLMMKEKSILNMLNNLLKLHTAEQIAFEVDLDDLHEMNEDLTEAVKQNTRR 263
S FS I + ++E++I+ +++ + V DD+ E E L + +++ +
Sbjct: 655 SEAFSVIIAAIDLQEETIIKDISDAYSVL--------VKFDDMEETLEVLLDYIRKCSTS 706
Query: 264 YTNMVSDVVYEMLPD--YKFKEVVAKDSLDVYIE-HRIMLEA 380
+ ++ + LP+ +++++ + K LD+Y + H I +A
Sbjct: 707 KEARIVYIILQNLPNISFRYQKKICKLLLDIYPQLHSIDYQA 748
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 156 LLKLHTAEQIAFEVDLDDLHEMNEDLTEAVKQNTRRY 266
LLK+ A+ F++ LD+L+++ L E +K+ + Y
Sbjct: 205 LLKILEAKHPEFQLFLDELNQLKPQLNE-IKEKLKTY 240
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = -2
Query: 383 SGFQHNSVLNVYIQGILCY-NLFEFV-----IRQHFINHV*HHISVSSGILF 246
SGF + SVL V++ G C+ N F + Q F+N +SS +L+
Sbjct: 201 SGFGYLSVLPVFVFGFTCHQNAFSVINEVRNFSQGFVNFTMFTAIISSTLLY 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,493
Number of Sequences: 5004
Number of extensions: 55725
Number of successful extensions: 184
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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