Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1314
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 128 4e-30
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 54 1e-07
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 42 4e-04
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 36 0.031
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991... 31 1.2
12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144 29 2.7
03_05_0532 - 25322822-25322932,25323018-25323050,25323187-253232... 29 2.7
10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604... 29 3.6
12_01_1001 - 10145663-10147006 28 6.2
06_02_0196 - 12898050-12898553,12898689-12900824 28 6.2
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 28 6.2
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 28 8.3
01_06_1346 - 36478844-36479266,36479369-36479728,36479820-364801... 28 8.3
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 128 bits (309), Expect = 4e-30
Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 3/186 (1%)
Frame = +3
Query: 147 LNNLLKLHTAEQIAFEVDLDDLH---EMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKF 317
LN L + + A +++LDDL + +++ + V +NT+RY + +D + E++P+
Sbjct: 35 LNILQDVANRKIRAVQIELDDLFHYKDADDEFLQRVTENTKRYIGIFADAIDELMPESTE 94
Query: 318 KEVVAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYFKDLSTSKSVPI 497
V +D D+ + R+ E + G DP R PPE+ R FEVY K S + I
Sbjct: 95 AYAVDEDR-DILMTQRVD-EGADGGADGT--DPLQRMPPEIRRFFEVYIKAFSKVTPLTI 150
Query: 498 REVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVRALQLTPTSACTDD 677
R+VKA +IG+LV + GIVTRC+DVKPL+ VA Y+C CG E YQ V A P C
Sbjct: 151 RQVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLFECPSQ 210
Query: 678 DCRLNK 695
C+LNK
Sbjct: 211 RCKLNK 216
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 53.6 bits (123), Expect = 1e-07
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Frame = +3
Query: 234 TEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRD 413
TE +R T M D + M +F +V+ K + Y+ L R E R
Sbjct: 39 TELEAMRSRESTTMYVDFAHVM----RFNDVLQKAISEEYLRFEPYLRNACKRFVMEQRT 94
Query: 414 PRNRYPPELIRRFEVYFKDLSTS-KSVP----IREVKAEHIGKLVTVRGIVTRCTDVKPL 578
NR P I + KD++ + ++P +RE+ IGKL V G+VTR ++V+P
Sbjct: 95 GENRAP---IISDDSPNKDINIAFYNIPMLKRLRELGTAEIGKLTAVMGVVTRTSEVRPE 151
Query: 579 LVVATYSCSACGAETYQPVRALQLTPTSACTDDDCR 686
L+ T+ C CG + + T C + C+
Sbjct: 152 LLQGTFKCLDCGNVVKNVEQQFKYTEPIICVNATCQ 187
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 42.3 bits (95), Expect = 4e-04
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Frame = +3
Query: 309 YKFKEVVAKDSLDV----YIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYF-KDL 473
++ E+ +SLDV +H L + R P E+ + +L+ R E F K +
Sbjct: 182 HRILELEGGESLDVNAHDVFDHDPDLYGKMVRYPLEVLAIFDIVLMDLVARIEPLFEKHI 241
Query: 474 ST-----SKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPVR 638
T SV +R + I K+V+++G++ RC+ V P L A + C CG + +PV
Sbjct: 242 QTRIYNLKSSVCLRNLNPSDIEKMVSIKGMIIRCSSVIPELKEAVFRCLVCGFYS-EPVM 300
Query: 639 A--LQLTPTSACTDDDCR 686
++T C + C+
Sbjct: 301 VDRGRVTEPHICQKEQCK 318
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 495 IREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACG 614
IR ++ H+ ++ + G+VTR + V P L + CS CG
Sbjct: 345 IRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKFDCSKCG 384
>03_05_0798 +
27798095-27798190,27798325-27798366,27799152-27799190,
27799238-27799420
Length = 119
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 427 THQSLSGDLKCTSKTCQHRKVYLSEKLRL 513
TH LS D+ S C+H K YL KL+L
Sbjct: 21 THLGLSSDIISKSFHCKHGKAYLFNKLKL 49
>12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144
Length = 300
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3
Query: 517 CSALTSLIGTLFDVDKSLKYTSNLLISSGGYLFLGSLISPGILWFLAS-NIILCSMYT 347
C+ L L L K + T +++ G+ FLG + GIL LAS N ++C +YT
Sbjct: 21 CNILPRLPFKLTTRLKVISSTPDIVGIPSGFDFLGCCLENGILSLLASTNGLVCILYT 78
>03_05_0532 -
25322822-25322932,25323018-25323050,25323187-25323222,
25323301-25323336,25323431-25323479,25323671-25323762,
25323899-25323984,25324098-25324261,25325573-25325601,
25325697-25325807,25326471-25326512,25326597-25326647,
25326848-25326898,25327325-25327382,25327823-25327908,
25328008-25328056,25328155-25328273,25328504-25328590,
25328726-25328787,25329222-25329290,25329884-25330133
Length = 556
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 138 LNMLNNLLKLHTAEQIAFEVDLDDLHEMNEDLTEAVK--QNTRRYTNMVSDVVYEMLPDY 311
+ MLN+LL H E + +DDL M +L +K ++ + D + L +Y
Sbjct: 484 IEMLNDLLLDHDIEMVETSFSVDDLQMMERELMSEIKLIEHNFEISESALDEYMDDLANY 543
Query: 312 KF 317
F
Sbjct: 544 AF 545
>10_07_0194 -
13957709-13957925,13960065-13960129,13960281-13960454,
13960847-13960889,13961081-13961225,13961305-13961413,
13961694-13961822,13961935-13962031,13962639-13962703,
13963275-13963439
Length = 402
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 646 CSARTGWYVSAPHALHEYVATTSSGFTSVHRVTIPRTVT 530
C A T + PH +H++++ +S F I R +T
Sbjct: 208 CQAATQIFYVPPHGIHQFLSDAASSFGDSRSCVIAREIT 246
>12_01_1001 - 10145663-10147006
Length = 447
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 466 LKYTSNLLISSGGYLFLGSLISPGILWFLAS-NIILCSMYT 347
L T +++ G+ FLG + GIL LAS N ++C +YT
Sbjct: 89 LSSTPDIVGIPSGFDFLGCCLENGILSLLASTNGLVCILYT 129
>06_02_0196 - 12898050-12898553,12898689-12900824
Length = 879
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = +3
Query: 456 VYFKDLSTSKSVPIREVKAEHIGKLVTVRGIVTRCTDVKPLLVVATYSCSACGAETYQPV 635
+YF + S K ++ A H+ ++ +G V TD+K L+ CG E + +
Sbjct: 775 IYFHENSFPKLRILKIWGAPHLNEIKMTKGAVASLTDLK-FLLCPNLKQLPCGIEHVRTL 833
Query: 636 RALQLTPTSACTDDDCRLNK 695
L L T+ D R K
Sbjct: 834 EELTLDHTAEELVDRIRQKK 853
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 600 CSACGAETYQPVRALQLTPTSACTDDDCRLNKT 698
C+ACG + + RA AC D+D +T
Sbjct: 8 CAACGDDAHAACRACSYALCKACLDEDAAEGRT 40
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 331 QRIPWMYTLSTELCWKPETTGFLEK*GILGTDTHQSLSGDLKCTSK 468
+R WM + S +C E LE +L T LS + KCT++
Sbjct: 833 EREKWMESESKWICLTEELRVDLESNRMLAEKTEMELSNEKKCTAE 878
>01_06_1346 -
36478844-36479266,36479369-36479728,36479820-36480110,
36480193-36480267,36482292-36482446,36482549-36482665,
36482757-36482976
Length = 546
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 467 FEVHFKSPDKLWWVSVPRIP 408
F F D+ WW+ VPR+P
Sbjct: 218 FRAAFHRRDEKWWLPVPRVP 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,072
Number of Sequences: 37544
Number of extensions: 320398
Number of successful extensions: 960
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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