Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1313
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    28   1.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   4.1  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.5  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   9.5  

>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 118 HNNMFGCYTYLF*CIYM*LYKCTDMYVLV 204
           H   +G Y YLF CIY   ++  DM +++
Sbjct: 338 HGPSYGLYLYLFFCIYKIKFQKCDMNIVM 366


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 467  ASIWPNCFVLYKVITSFDPKYLLPSPI-KFYN*NQSIVLRFK 589
            A ++P+    YK I S++P    P+P+ KF+  +  I+  FK
Sbjct: 911  ARLFPSMTDFYKEILSWEPANQSPNPVLKFHKLDGKIIDSFK 952


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 90  ELSNGMMHEYIEWSY-KAISAELFFLYFMF 4
           ++  G +   + W+Y KA S  L FLYF+F
Sbjct: 880 KMERGKVKWKVYWTYFKACSLFLIFLYFLF 909


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 52  PFNILVHHSIG*FYQSYINEYLHNNMFGCYT 144
           P N  +  S+  F+  +++  LH  + GC T
Sbjct: 387 PLNSFMSKSLSTFFTFFVSSVLHELVMGCIT 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,656
Number of Sequences: 5004
Number of extensions: 67467
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)