Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1312
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.4  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   3.1  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    27   4.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   4.1  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   4.1  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   7.2  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   9.6  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/52 (21%), Positives = 29/52 (55%)
 Frame = +3

Query: 516 VTAVRDNINLQIEDHILEVPEFVLGGPVSDVMSHIVVGTDELTTVDEYENNI 671
           V+ +++ IN+ +   +L  P F +G   + +  ++ V  DE+  +  Y++++
Sbjct: 38  VSHIKNAINVSLPTALLRRPSFDIGKVFACIKCNVKVSLDEINAIFLYDSSM 89


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 702 SLSNAVSHQFLYYFHTHRLLSTRQFPQRYVTSHPTLVP 589
           SLS+   HQ  + FHT  +  T Q   +  TS P ++P
Sbjct: 126 SLSSQPKHQEFHLFHTPTIPRTTQLSSK--TSSPIVIP 161


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 689 RYPISFYIIFILIDCCQLVSSHND 618
           ++ + FY  +++ D  Q+VS HND
Sbjct: 120 QFGVGFYSAYLVADKVQVVSKHND 143


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 207  HPRNRTSTNEKFDTLLGCYSKR---IVYGHHTSMYCR*F*SYCRRLAPF 70
            HP   +  NE++D LLG    +     YG H S       SY  RL PF
Sbjct: 1984 HPERESQFNERYDLLLGLNDSQQQPFHYGTHYSS-AMIVCSYLIRLRPF 2031


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = -3

Query: 726 KRFNNKQTSLSNAVSH----QFLYYFHTH 652
           KR+ N++  +  A+SH    + + +FHTH
Sbjct: 60  KRYKNRELQIMRAISHPNIIKLIAFFHTH 88


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -3

Query: 675 FLYYFHTHRLLSTRQFPQRYVTSHPTLVPPTRIQELPEYGLRF 547
           FLY      LLS  QFP  Y T     +      ELP  GL++
Sbjct: 511 FLYSLEIQNLLSQNQFPTVYFTKISDQINNYE-GELPTDGLKY 552


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 198 NRTSTNEKFDTLLGCYSKRIVYGHHTSMYCR*F 100
           N+ +T+E+F T LG  S  I+  +H S+  + F
Sbjct: 281 NKLATDEQFATSLGIDSSLILEVYHNSLQTKEF 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,127
Number of Sequences: 5004
Number of extensions: 66675
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)