Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1312
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0657 - 21605598-21606199,21606524-21606641                       32   0.62 
03_02_0465 - 8688454-8689899                                           29   4.4  
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371...    29   5.8  
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302...    29   5.8  
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    28   7.6  

>12_02_0657 - 21605598-21606199,21606524-21606641
          Length = 239

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 567 EVPEFVLGGPVSDVMSHIVVGT-DELTTVDEYENNIKTDGIPHLT 698
           ++  FVLGGP +D +SH  VG   ++  + EY  +   +G+ +LT
Sbjct: 188 DICSFVLGGPDADDLSHREVGVFYDVHRLGEYAESFVDEGLANLT 232


>03_02_0465 - 8688454-8689899
          Length = 481

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 705 TSLSNAVSHQFLYYFHTHRLLSTRQFPQRYVTSHPTLVPPTRIQEL 568
           T  S A+ H   +  H HR+ S RQ P     +  +L P   + +L
Sbjct: 135 THYSPALEHLTTFRTHLHRITSLRQLPPGLAVAGSSLSPGLHVYDL 180


>08_01_0418 -
           3716226-3716279,3716531-3716581,3716656-3716751,
           3717037-3717194,3717303-3717417,3717511-3717564,
           3717843-3717950,3718494-3718583,3718818-3718856,
           3718993-3719172,3719264-3719576,3719659-3719834
          Length = 477

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 ECLAIMRKFLKFKWQVHNAQEHLKVKGLNQSQETLDHTYLPQPLSS-LDVSSKC 413
           E +A+  K +++  +VH  +EH+K K   + Q   D       LSS ++   KC
Sbjct: 344 EIMALDTKIIEWDGKVHEMEEHVKAKEKKKDQIVADENQKLAALSSEVEWKLKC 397


>06_03_1404 -
           29928792-29929040,29929147-29929551,29930130-29930280,
           29930363-29930501,29930578-29930743,29930826-29931041,
           29931142-29931323,29931412-29931538,29931974-29932112,
           29932227-29932353,29932501-29932612,29932704-29932784,
           29933330-29933483,29933569-29933689,29934003-29934045,
           29934356-29934460
          Length = 838

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 689 RYPISFYIIFILIDCCQLVSSHNDM*HHI 603
           ++ + FY ++++ D  +++S HND   H+
Sbjct: 222 QFGVGFYSVYLVADYVEVISKHNDDKQHV 250


>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 352 SCDW-FSPLTFKCSCALCTCHLNFRNFLIIAKHSQQTS 242
           S  W F P T   +C LCT  LN   FL+I++ S  T+
Sbjct: 294 SASWNFPPFTLFLNC-LCTFILNMSVFLVISRTSALTA 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,671,809
Number of Sequences: 37544
Number of extensions: 408286
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)