Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1311
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans... 48 2e-06
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 28 1.4
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo... 28 1.4
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 4.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 4.1
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 7.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.2
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.5
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 9.5
>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
transporter Hut1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 47.6 bits (108), Expect = 2e-06
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Frame = +2
Query: 197 IFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQCTVNYIFAQILMLSWKHEKD---- 364
I+ + + ++QEK+ Y + E+F++ L L Q + + L+ +W H
Sbjct: 15 IYGSFLSWAVMQEKIITRPY-DGERFSSPALLSLAQSFMTVLCG--LLWNWFHGVSARGL 71
Query: 365 -NTKKIYYFSS-ALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRKSYPL 538
K + YFSS A++ L ++ ++YPT ++GK+ K +PV+ L V + ++ +P
Sbjct: 72 LEPKFLGYFSSIAISASLSSYFGYASMFHLSYPTVILGKSCKLLPVIALHVFVYKRKFPP 131
Query: 539 KKY 547
KY
Sbjct: 132 HKY 134
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 229 KHSINKVTCKNRAGIKYESKFRAALSHFC 143
KH++N +TC R I Y S F A FC
Sbjct: 224 KHNLNPLTCTGRFIIGYVSTFAAYWLGFC 252
>SPCC338.10c |cox5||cytochrome c oxidase subunit
V|Schizosaccharomyces pombe|chr 3|||Manual
Length = 174
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +2
Query: 710 EHSPTAYA-MMLNTNWWSTII-LTIGVVLSGEI 802
EH P A++ + T +W T+ LTIGVVL G I
Sbjct: 84 EHGPRAFSHISQKTVFWGTVAGLTIGVVLFGLI 116
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 326 AQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQ 442
A+++ + E+DN KKIY F L+ L M+ S LQ
Sbjct: 372 AKLICALREWEEDNEKKIYVFGKPLSSRLLMIHSPPILQ 410
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 648 SSSPIPMPGVSSVTFFWSLYMNSTTPITI 562
SSSP P PG SS + STTP+++
Sbjct: 1618 SSSPPPQPGNSSGMSAMNTNTTSTTPVSL 1646
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 648 SSSPIPMPGVSSVTFFWSLYMNSTTPITI 562
SSSP P PG SS + STTP+++
Sbjct: 1618 SSSPPPQPGNSSGMSAMNTNTTSTTPVSL 1646
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -2
Query: 517 KKDTEHQDWDGF-CRFSHNLSRVVDPLQRHVRADHTQEIR*SRREVVN---FLG 368
+ + H++ F C F + D L RHV+ H Q+ S R ++N FLG
Sbjct: 45 RHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLSERRMLNASCFLG 98
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 696 SCTAPVRPSMRSDNIKSSSPIPMPGVSSVT-FFWSLYMNSTTPIT 565
S + P P+ S SSSP+P S T NSTTP+T
Sbjct: 312 STSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVT 356
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = -3
Query: 759 DHQFVFNIIAYAVGECSLLIRSCTA-----PVRPSMRSDNIKSSSPIPMPGVSSV 610
DHQ ++ + YA + L +RPS ++ S+SP+ +P +SS+
Sbjct: 117 DHQAIWQTLRYAYSQTGPLRHRRLHYLQDNKIRPSKIPKSLPSNSPVRLPYISSL 171
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 377 IYYFSSALTYLLGMVCSNMALQWVNYPTQVVG 472
+Y S AL+ +G CSN++L+ +N+ V+G
Sbjct: 61 LYLVSVALSPFIG--CSNVSLRLINWLVGVIG 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,389,739
Number of Sequences: 5004
Number of extensions: 72656
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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