Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1311
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82... 54 1e-07
06_03_0629 + 22920206-22920291,22920430-22920527,22920657-229207... 54 1e-07
03_01_0124 + 971213-971341,971741-971769,971877-972078,972839-97... 36 0.029
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 29 3.3
12_01_0661 + 5596739-5597047,5597125-5597703 29 5.7
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 29 5.7
12_02_0462 - 19373358-19373702,19373836-19373979,19374105-193741... 28 10.0
>05_01_0119 +
820566-820739,822708-822737,823153-823266,823341-823433,
823521-823586,824076-824174,824480-824559,825039-825151,
825600-825688,825955-826041,826128-826130,826285-826383
Length = 348
Score = 54.4 bits (125), Expect = 1e-07
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Frame = +2
Query: 182 FYAGSIFTCYFIYGMLQ----------EKVTRGVYGNNEKFTATLSLVLVQC---TVNYI 322
F I + IYG+LQ EK+ R YG ++F SL LV C T + +
Sbjct: 42 FAVVGIMSTLLIYGLLQILINSLVLRLEKIMRVPYGAEKEFFR-YSLFLVFCNRITTSTV 100
Query: 323 FAQILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLM 502
A +L S K Y +++ +L C AL++V++P Q + K AK IPV++
Sbjct: 101 SALVLTASKKSLDPVAPLQKYCVVSVSNILTTTCQYEALKYVSFPVQTLAKCAKMIPVMI 160
Query: 503 LGVLLGRKSYPLKKY 547
G ++ RK Y K Y
Sbjct: 161 WGTIIMRKKYGGKDY 175
>06_03_0629 +
22920206-22920291,22920430-22920527,22920657-22920796,
22921596-22921626,22922025-22922128,22922439-22922560,
22922651-22923050,22923245-22923268
Length = 334
Score = 54.0 bits (124), Expect = 1e-07
Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 9/204 (4%)
Frame = +2
Query: 182 FYAGSIFTCYFIYGMLQEKVTRGVYGNN-EKFTATLSLVLVQCTVNYIFAQILMLSWKHE 358
F I++ Y G+LQE ++ +G +F L Q V ++++ I++ W
Sbjct: 10 FCVAGIWSAYITQGVLQETLSTKRFGPEARRFDHLAFLNFAQNVVCFVWSFIMIKLWSSG 69
Query: 359 KDNTKKIY----YFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRK 526
++ Y+ ++T +G AL++++YP QV+ K++K IPV+++G +L
Sbjct: 70 GSSSAGRAPLRKYWGVSITNTVGPAMGIEALKFISYPAQVLAKSSKMIPVMLMGTILYGV 129
Query: 527 SYPLKKY-XXXXXXXXXXXXXMYKDQKKVTDE--TPXXXXXXXXXXXXXXXXXXXXAVQE 697
Y +Y + K K + P + Q+
Sbjct: 130 KYTFPEYICTFLVAGGVSSFALLKTSSKTIKKLANPNAPLGYTLCFLNLAFDGYTNSTQD 189
Query: 698 RIKSEHSPT-AYAMMLNTNWWSTI 766
IKS + T + +ML N W TI
Sbjct: 190 LIKSRYPKTNPWDIMLGMNLWGTI 213
>03_01_0124 +
971213-971341,971741-971769,971877-972078,972839-973081,
973172-973273,973743-974180
Length = 380
Score = 36.3 bits (80), Expect = 0.029
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = +2
Query: 434 ALQWVNYPTQVVGKAAKPIPVLMLGVLLG--RKSYPLKKY 547
+L ++NYP Q++ K+ K +PV+++G + R+ YP +Y
Sbjct: 104 SLAFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEY 143
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 143 AKMAKSSTEFRFIFYAGSIFTCYFIYGMLQEKVTRGVYGNN 265
A + +R + ++ C+FI G++Q K +G YG++
Sbjct: 805 ATVVSMYVNWRMGLVSWAVMPCHFIGGLIQAKAAKGFYGDS 845
>12_01_0661 + 5596739-5597047,5597125-5597703
Length = 295
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 350 SKITLKFEQRCNSLYIVQELMIRWP*ISHYYHI 252
S++ LKF+QR + LY ++L +W + + Y I
Sbjct: 39 SQVALKFQQRTHLLYTKRQLKNKWDKLRNEYTI 71
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 726 AVGECSLLIRSCTAPVRPSMRSDNIKSSSPIPMPGVSSVTFFWSLYMNSTTPITIR 559
A CS R T+P S + + SSS +P + V + + +T P+T+R
Sbjct: 29 AAAACSTPRRGKTSPHASSRHASSSSSSSSLPSCSAARVAVTPAPHATATAPVTMR 84
>12_02_0462 -
19373358-19373702,19373836-19373979,19374105-19374155,
19374352-19374525,19374864-19374903,19375938-19376026
Length = 280
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 397 SNVSLGYGLL*HGVAMGQLPYSGCGKSGKTHPSPDARCPSWSQVISSEEIP 549
+NV G+ + Q +S G ++ PD RCP + V SSE +P
Sbjct: 94 NNVIAGWNIEPESYNDSQTHFSTWFTQG-SNACPDMRCPGFESVFSSEIVP 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,651,939
Number of Sequences: 37544
Number of extensions: 422818
Number of successful extensions: 975
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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