Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1311
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical...   140   1e-33
U00067-9|AAK20073.1|  364|Caenorhabditis elegans Hypothetical pr...    51   1e-06
U00067-10|ABD94100.1|  247|Caenorhabditis elegans Hypothetical p...    41   0.001
U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical pr...    34   0.10 
AF036696-3|ABB51190.1|  292|Caenorhabditis elegans Hypothetical ...    32   0.42 
AF036696-2|AAB88349.1|  324|Caenorhabditis elegans Hypothetical ...    32   0.42 
Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical p...    29   5.1  
U80840-8|AAB37927.1|  235|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>AL132904-16|CAC35849.1|  340|Caenorhabditis elegans Hypothetical
           protein Y111B2A.20 protein.
          Length = 340

 Score =  140 bits (338), Expect = 1e-33
 Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 4/213 (1%)
 Frame = +2

Query: 176 FIFYAGSIFTCYFIYGMLQEKVTRGVYG----NNEKFTATLSLVLVQCTVNYIFAQILML 343
           F+  AG I  CYF++G+ QE++ +G Y     + EKFT T +LV   CT N I+A   ++
Sbjct: 24  FLICAGGILICYFVFGIQQERIVQGKYELPDESIEKFTFTQALVFFLCTANTIYA--FLI 81

Query: 344 SWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGR 523
             K E DN     Y +SA +YLL MV SN ALQ++ YPTQV+ K+ KPIPV++ GVL   
Sbjct: 82  RKKTEIDNVPTKMYAASAASYLLAMVASNQALQYLPYPTQVLAKSCKPIPVMIFGVLFAH 141

Query: 524 KSYPLKKYXXXXXXXXXXXXXMYKDQKKVTDETPXXXXXXXXXXXXXXXXXXXXAVQERI 703
           KSY  +KY             +YK+ KK   E                      ++Q+RI
Sbjct: 142 KSYHWRKYCYVLMIVVGVAMFLYKN-KKGGAEDKDFGFGELLLIFSLAMDGTTTSIQDRI 200

Query: 704 KSEHSPTAYAMMLNTNWWSTIILTIGVVLSGEI 802
           K  +  T  +MM  TN +S++ L+ G++++GE+
Sbjct: 201 KKSYQRTGTSMMFYTNLYSSLYLSAGLLVTGEL 233


>U00067-9|AAK20073.1|  364|Caenorhabditis elegans Hypothetical
           protein F54E7.1a protein.
          Length = 364

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 38/128 (29%), Positives = 59/128 (46%)
 Frame = +2

Query: 149 MAKSSTEFRFIFYAGSIFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQCTVNYIFA 328
           +A+     +F+  + +IF  Y  YG +QE + +        +T TL   L+     Y   
Sbjct: 33  IARKPKWLQFVLLSLAIFILYIGYGYMQELIFKLPGMKPFGWTLTLIQFLIYSGCGYTEC 92

Query: 329 QILMLSWKHEKDNTKKIYYFSSALTYLLGMVCSNMALQWVNYPTQVVGKAAKPIPVLMLG 508
            I    W + K       Y   A   +  M  SN ++ ++NYPTQV+ K  K IPVL+ G
Sbjct: 93  II----WHNTKRMIPWRIYGVIAFFTVATMGLSNASVGYLNYPTQVIFKCCKLIPVLIGG 148

Query: 509 VLLGRKSY 532
           +L+  K Y
Sbjct: 149 ILIQGKRY 156


>U00067-10|ABD94100.1|  247|Caenorhabditis elegans Hypothetical
           protein F54E7.1b protein.
          Length = 247

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/39 (48%), Positives = 27/39 (69%)
 Frame = +2

Query: 416 MVCSNMALQWVNYPTQVVGKAAKPIPVLMLGVLLGRKSY 532
           M  SN ++ ++NYPTQV+ K  K IPVL+ G+L+  K Y
Sbjct: 1   MGLSNASVGYLNYPTQVIFKCCKLIPVLIGGILIQGKRY 39


>U80840-1|AAK68304.1|  498|Caenorhabditis elegans Hypothetical
           protein F08D12.6 protein.
          Length = 498

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
 Frame = -3

Query: 777 IVRIIVDHQFVFNIIAYAVGECSLLIRSCTAPVRPSMRSDNIKSSSPIPMP--GVSSVTF 604
           I+R +V++   +N + +++  CS   +SC  P+R  +R  NI    P+ +     +SV  
Sbjct: 14  IIRNVVENLSFYNQLTFSL--CSKATKSCVTPLRHKIRKINITVDHPLKIHIFSSNSVMT 71

Query: 603 FWSLYMNSTTPITIRNTNRYFFRGYDLRPRRTPSIRTGMGF 481
           + S Y  +     +++        +D     T S+R   GF
Sbjct: 72  YLSFYKYNFDLWNVQSCGSIIATEFDTNFFGTESVREIKGF 112


>AF036696-3|ABB51190.1|  292|Caenorhabditis elegans Hypothetical
           protein F15B10.1b protein.
          Length = 292

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 383 YFSSALTYLLGMVCSNMALQW-VNYPTQVVGKAAKPIPVLMLGVLLGRKSYPLKKY 547
           YF +   + +  V +N AL + V  P  ++ ++   +  L+L V++  KSY  +KY
Sbjct: 35  YFKTVTMFFIVNVVNNQALNFHVPVPLHIIFRSGSLLATLILSVVMVGKSYSARKY 90


>AF036696-2|AAB88349.1|  324|Caenorhabditis elegans Hypothetical
           protein F15B10.1a protein.
          Length = 324

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 383 YFSSALTYLLGMVCSNMALQW-VNYPTQVVGKAAKPIPVLMLGVLLGRKSYPLKKY 547
           YF +   + +  V +N AL + V  P  ++ ++   +  L+L V++  KSY  +KY
Sbjct: 67  YFKTVTMFFIVNVVNNQALNFHVPVPLHIIFRSGSLLATLILSVVMVGKSYSARKY 122


>Z93396-1|CAB07709.1|  875|Caenorhabditis elegans Hypothetical
           protein ZC15.1 protein.
          Length = 875

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 565 NKKYKQVFLQRI*LATKKDTEHQDWDGFCRFSHNLSRVVDPLQRHVRADHT 413
           N    Q+F+    L  ++ +E  DW+ F R +HNL +    L R++RA  T
Sbjct: 775 NASGHQMFIPTFSLFVRRRSEVLDWESFGRRNHNLPK----LPRNIRASKT 821


>U41533-13|AAA83174.3|  955|Caenorhabditis elegans Hypothetical
           protein R05F9.12 protein.
          Length = 955

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 582 STTPITIRNTNRYFFRGYDLRPRRTPSIRT 493
           +T P    +    F RGY + PR+TPSI T
Sbjct: 759 ATVPAPTTSRIPVFVRGYSVIPRQTPSITT 788


>U80840-8|AAB37927.1|  235|Caenorhabditis elegans Hypothetical
           protein F08D12.4 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 361 RQYQENLLLLFCSNVSLGYGLL*HGV--AMGQLPYSGCGKSGKTHPSPDARCPSW 519
           +Q     L +F SNV LG+G+   GV    GQ+ YS    + K     D   P+W
Sbjct: 148 KQNMRETLFVFPSNVRLGWGVWVDGVKDVAGQVKYSDTTLNLKLGYKWDIGQPNW 202


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 176 FIFYAGSIFTCYFIYGMLQEKVTRGVYGNNEKFTATLSLVLVQCTV 313
           F+ Y   ++  YF Y  + +K +     N +    TLS  +V CTV
Sbjct: 142 FVTYHIFLYDTYFQYNAVADKFSLASKYNIKDIFTTLSCFMVSCTV 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,533,417
Number of Sequences: 27780
Number of extensions: 402563
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)