Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1310
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   0.55 
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    27   0.96 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   2.9  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   5.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   5.1  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.0  

>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 0.55
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 175 SLHRYLRNYVLHKIL--CHRCPFCLVSSLRLPSVCLSPPW 62
           SL     N V H +L  C +     +SS ++P VC+SP W
Sbjct: 194 SLQMTEENPVSHAVLYDCSQETLKKISSAQVPIVCVSPKW 233


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +2

Query: 146 DIISEVAMKATAVTKAMEGTKVSASVTKKDTISEAKATTYADMEAVSTVVAAXTGSQLPV 325
           D I + A++   + K        +    KDT+ + K   Y+D    S  +   T S LPV
Sbjct: 355 DSIPDAALENLIIQKNSLAAPSESLKQFKDTLKDRKLRIYSDSFNESVAIVDTTDSSLPV 414


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 88  PSVCLSPPWQRQPRPTMPPK*PCTS 14
           P   L PP    PRP++PP  P ++
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASA 157


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 3   GDHNEVHGYFGGIVGRGCLCQGG 71
           G H  +HG  GG  GRG    GG
Sbjct: 114 GHHGPLHGPHGGFGGRGGGRMGG 136


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 165 ATSEIMSSIRSYVIDAPFVLFLLFDCL 85
           A S I+SSI  Y +     L LL+DC+
Sbjct: 700 AYSSILSSIEEYHLRFGLKLMLLWDCV 726


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 605

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 89 AFGVPFSSLAKATTANDATKITVY 18
          +FG  F    ++ T ND T IT+Y
Sbjct: 4  SFGRLFRGSEESPTINDLTSITIY 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,051
Number of Sequences: 5004
Number of extensions: 19073
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)