Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1310
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347 30 0.68
02_04_0142 + 20167876-20169108 30 0.68
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128... 29 1.6
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 29 1.6
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 29 1.6
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708... 28 2.7
03_05_0576 + 25765137-25766420 28 2.7
07_03_0305 - 16475127-16476017,16476058-16478067 27 3.6
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 27 4.8
05_06_0123 + 25817172-25817470,25818983-25819133,25819217-258193... 27 4.8
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 27 4.8
07_03_0394 - 17633753-17636788 27 6.3
01_01_0378 - 2953514-2954341,2954388-2954504 27 6.3
11_03_0186 + 11332864-11333697 26 8.4
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 26 8.4
>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
Length = 137
Score = 29.9 bits (64), Expect = 0.68
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 37 ASLAVVAFAKEEKGTPKAVEEKKQDKR 117
ASL V AKEEK K EEKK DK+
Sbjct: 65 ASLLSVGPAKEEKKEEKKPEEKKDDKK 91
>02_04_0142 + 20167876-20169108
Length = 410
Score = 29.9 bits (64), Expect = 0.68
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 337 GSRLNWQLASSXRRYYRTHRLHVRISCSFRLRNRVLLGD 221
G RL+ +L R++ + LH CS+ RN++ L D
Sbjct: 193 GMRLSGKLKEEARKHLNSKHLHYEEMCSYHNRNKMCLFD 231
>11_01_0154 +
1281434-1281725,1281923-1281987,1282112-1282175,
1282303-1282449,1282583-1282677,1284358-1284465
Length = 256
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 103 SSLRLPSVCLSPPWQRQPRPTMPPK*PCTS 14
+++ PS+ S P R+P +PP PC+S
Sbjct: 3 AAVATPSLLFSSPTPRRPSSCLPPPPPCSS 32
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 21 HGYFGGIVGRGCL--CQGGERHTEGSRREETRQKG 119
HGY GG GRG GG + E + R E R +G
Sbjct: 335 HGYTGGADGRGQYRGSDGGRKDGEATPRREIRVRG 369
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 6 DHNE-VHGYFGGIVGRGCLCQGG 71
+H++ + GYF I+G CLC GG
Sbjct: 251 EHSKCMDGYFAPILGYNCLCDGG 273
>06_03_1097 -
27570037-27570262,27570575-27570730,27570763-27570881,
27572154-27572236,27574991-27575041,27575218-27575674,
27576139-27576228,27576672-27576701
Length = 403
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 133 LCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTM 38
L HR P L S R + S WQ+QPR M
Sbjct: 301 LVHRLPQALRFSNRFSCILSSARWQQQPRDGM 332
>03_05_0576 + 25765137-25766420
Length = 427
Score = 27.9 bits (59), Expect = 2.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 85 SVCLSPPWQRQPRPTMPP 32
+V +SPP Q +PRP +PP
Sbjct: 98 AVSVSPPTQPRPRPELPP 115
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 73 SPPWQRQPRPTMPPK*PC 20
SPP Q P P +PP PC
Sbjct: 26 SPPPQTAPAPALPPSNPC 43
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 27.1 bits (57), Expect = 4.8
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +2
Query: 152 ISEVAMKATAVTKAMEGTKVSASVTKKDTISEAKATTYADMEAVSTVVAAXTGSQLPVKA 331
++++ K VT + GT VSAS + I+E K ++ + +PV A
Sbjct: 1361 LNKIVSKPEVVTSEVTGTTVSASTSSSVPITEGKPSSIPATSGSLPSIPVSAPKVVPVSA 1420
>05_06_0123 +
25817172-25817470,25818983-25819133,25819217-25819399,
25819740-25819814,25819985-25820140,25820275-25820373,
25820457-25820587,25821077-25821158,25821251-25821598
Length = 507
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 110 TKGASMT*DLMEDIISEVAMKATAVTKAME--GTKVSASVTKKDTISEAKATTYADMEAV 283
TKG S+ + ED++SE+ KAME G + + DT+ YAD V
Sbjct: 203 TKGFSINDAVGEDVVSELG-------KAMERQGLDMKIAALVNDTVGTLAGGRYADNSVV 255
Query: 284 STVV 295
+ ++
Sbjct: 256 AAII 259
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 168 IATSEIMSSIRS-YVIDAPFVLFLLFDCLRCAFLL 67
+ TSEI + S +V PF++ L+ C+ CA LL
Sbjct: 387 LTTSEIDYYVWSCFVYSVPFLVTLISCCMTCALLL 421
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -1
Query: 208 LRALHSFRDRRSLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPR 47
L++L S+RD R+ +L +L ++ + PF ++ ++CL W R PR
Sbjct: 940 LQSLLSWRDPRATSMFLLFCLLTAVILYVTPFQVI------ALCLGFFWMRHPR 987
>01_01_0378 - 2953514-2954341,2954388-2954504
Length = 314
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 145 LHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMP 35
L + +CH FCL ++ LP+V LS ++ P +P
Sbjct: 89 LDQSICHG--FCLRAAYELPAVVLSVQYRLAPEHRLP 123
>11_03_0186 + 11332864-11333697
Length = 277
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 36 GIVGRGCLCQGGERHTEGSRREETRQKGHL*HRILW 143
G+VGR CL + G T + + +Q+G ++LW
Sbjct: 190 GLVGRFCLVKIGRPSTLSAPSKSLQQRGVWCSKLLW 225
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 70 PPWQRQPRPTMPP 32
PP Q+QPRP PP
Sbjct: 84 PPQQQQPRPVSPP 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,832,655
Number of Sequences: 37544
Number of extensions: 153653
Number of successful extensions: 612
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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