Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1310
(376 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 28 2.5
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 2.5
U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protei... 27 3.3
U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protei... 27 3.3
U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protei... 27 3.3
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 27 3.3
Z77131-4|CAD66219.1| 203|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 26 7.6
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 26 7.6
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 26 7.6
>Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical
protein F53B6.6 protein.
Length = 610
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 180 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 22
+++F ++SE+ S S VI + +L LF C+ FL+ + N H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 177 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 61
+ IAT ++S+I + ++ P+ +F C RC + G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -1
Query: 175 SLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCTSLWSP 2
S H Y + C CP + R+P C +P P P PP PC + + P
Sbjct: 12 SFHFAFAQYPFGRGGCGGCPTPMCQP-RMP--CAAPMPMPMPMPVCPPPPPCPAQFCP 66
>U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protein
1, isoform c protein.
Length = 90
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 73 SPPWQRQPRPTMPPK*PCTSLWSP 2
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protein
1, isoform b protein.
Length = 561
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 73 SPPWQRQPRPTMPPK*PCTSLWSP 2
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protein
1, isoform d protein.
Length = 658
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 73 SPPWQRQPRPTMPPK*PCTSLWSP 2
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 73 SPPWQRQPRPTMPPK*PCTSLWSP 2
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>Z77131-4|CAD66219.1| 203|Caenorhabditis elegans Hypothetical
protein C54C6.6 protein.
Length = 203
Score = 26.6 bits (56), Expect = 5.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -1
Query: 373 FSCASGVHNDRGGSRLNWQLASSXRRYYRTH---RLHVRISCSFRLRNRVLLGDR 218
F C + D G +++ + L+ +R Y T+ L ++I + R+R RV DR
Sbjct: 117 FICTMPMRMDEGWNQIQFNLSDFVKRAYGTNYVETLRIQIHANCRIR-RVYFADR 170
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 26.2 bits (55), Expect = 7.6
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 110 TKGASM-T*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKDTISEAKATTYADMEAVS 286
T GAS T + I+S A T VT K S + T T SEA +TT A + S
Sbjct: 157 TSGASSSTASVSSTILSSTA--TTMVTSTPTTEKSSTTTTSTPT-SEATSTTTAMITTTS 213
Query: 287 TVVAAXTGSQLPVK 328
T + P K
Sbjct: 214 GTTENPTTTDCPTK 227
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 179 AVTKAMEGTKVSASVTKKDTISEAKATTYADMEAVSTVVAAXTGSQL 319
A T T SVT K+T +EA ATT +T T ++
Sbjct: 230 AATTKDSVTTTEGSVTDKETTTEASATTTEGSATQATTAEETTAGEV 276
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 179 AVTKAMEGTKVSASVTKKDTISEAKATTYADMEAVSTVVAAXTGSQL 319
A T T SVT K+T +EA ATT +T T ++
Sbjct: 230 AATTKDSVTTTEGSVTDKETTTEASATTTEGSATQATTAEETTAGEV 276
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 179 AVTKAMEGTKVSASVTKKDTISEAKATTYADMEAVSTVVAAXTGSQL 319
A T T SVT K+T +EA ATT +T T ++
Sbjct: 230 AATTKDSVTTTEGSVTDKETTTEASATTTEGSATQATTAEETTAGEV 276
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 179 AVTKAMEGTKVSASVTKKDTISEAKATTYADMEAVSTVVAAXTGSQL 319
A T T SVT K+T +EA ATT +T T ++
Sbjct: 230 AATTKDSVTTTEGSVTDKETTTEASATTTEGSATQATTAEETTAGEV 276
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 26.2 bits (55), Expect = 7.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 73 SPPWQRQPRPTMPP 32
+PPWQR +P+ PP
Sbjct: 947 APPWQRSRQPSPPP 960
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,287,985
Number of Sequences: 27780
Number of extensions: 115719
Number of successful extensions: 494
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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