Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1308
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...    33   0.058
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    29   0.72 
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   5.0  
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    25   8.8  

>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 13/24 (54%), Positives = 20/24 (83%)
 Frame = +2

Query: 5   AAQLYKENRREYEKRVKACVEQSF 76
           AAQL++EN++EY +RV+  VE S+
Sbjct: 126 AAQLHRENKKEYVRRVRKTVEDSW 149


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 376  ITWYILNNVFKLLPLDNIWF 317
            + W +L +V K+L L+N+WF
Sbjct: 2190 VVWAVLLSVIKILSLNNVWF 2209


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +2

Query: 149 YTCIHWNESVNCKFYYLHTCLDIFSQN 229
           + C+ W E V   + +++TC+++  +N
Sbjct: 522 FKCMDWAEKVRLLWEFVNTCINVLYKN 548


>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 5   AAQLYKENRREYEKRVKACVEQS 73
           AA+ ++EN +E++KRV+  V +S
Sbjct: 141 AAKEFRENPQEFKKRVRRLVRRS 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,864
Number of Sequences: 5004
Number of extensions: 56559
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)