Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1308
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.        44   9e-05
AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin con...    44   9e-05
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    31   0.88 
U70849-3|AAK67232.1|  166|Caenorhabditis elegans Ubiquitin conju...    29   4.7  
AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    29   4.7  
AF106565-1|AAC97374.1|  166|Caenorhabditis elegans ubiquitin-con...    29   4.7  
AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine re...    28   8.2  

>U08139-1|AAA83388.1|  192|Caenorhabditis elegans ubc-1 protein.
          Length = 192

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   MAAQLYKENRREYEKRVKACVEQSFID 82
           +AAQLY+ENRREYEKRV+  VEQS+++
Sbjct: 125 LAAQLYQENRREYEKRVQQIVEQSWLN 151


>AF045638-8|AAC02561.2|  192|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein1 protein.
          Length = 192

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 19/27 (70%), Positives = 25/27 (92%)
 Frame = +2

Query: 2   MAAQLYKENRREYEKRVKACVEQSFID 82
           +AAQLY+ENRREYEKRV+  VEQS+++
Sbjct: 125 LAAQLYQENRREYEKRVQQIVEQSWLN 151


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -2

Query: 400 YCSFYL*YITWYIL---NNVFKLLPLDNIWFINPIWIYTN 290
           YC  +   ++W +L   NN+F+LLP   + FI P+ +Y++
Sbjct: 236 YCIVFTGVLSWTVLTSLNNLFRLLPDFLLRFIQPLLLYSS 275


>U70849-3|AAK67232.1|  166|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein9 protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 5   AAQLYKENRREYEKRVK 55
           A Q+Y +NR EYEKRVK
Sbjct: 133 AYQIYCQNRAEYEKRVK 149


>AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +2

Query: 8   AQLYKENRREYEKRVKACVEQ 70
           AQL +E+RRE EKRVK   EQ
Sbjct: 413 AQLIEESRRETEKRVKEEAEQ 433


>AF106565-1|AAC97374.1|  166|Caenorhabditis elegans
           ubiquitin-conjugating enzyme 9homolog protein.
          Length = 166

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 5   AAQLYKENRREYEKRVK 55
           A Q+Y +NR EYEKRVK
Sbjct: 133 AYQIYCQNRAEYEKRVK 149


>AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein134 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 58  CFHSLFVFSSILLVKLCGH 2
           C H LF+FS IL +  C H
Sbjct: 308 CNHCLFLFSMILTINTCSH 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,811
Number of Sequences: 27780
Number of extensions: 308808
Number of successful extensions: 536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)