Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1308
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   1.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.1  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   5.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.4  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 385 NKNYNNMYNEQIFH*ITY 438
           N NYNN  N+++++ I Y
Sbjct: 315 NNNYNNYNNKKLYYNINY 332


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 361 KYTKLCIINKNYNNMYN 411
           KY+     N NYNN YN
Sbjct: 90  KYSNYNNYNNNYNNNYN 106


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 361 KYTKLCIINKNYNNMYN 411
           KY+     N NYNN YN
Sbjct: 90  KYSNYNNYNNNYNNNYN 106


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +3

Query: 189 FITCILVWTFSVKI 230
           F+TCI +W + + +
Sbjct: 220 FVTCIFIWAYVIPL 233


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +3

Query: 189 FITCILVWTFSVKI 230
           F+TCI +W + + +
Sbjct: 220 FVTCIFIWAYVIPL 233


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 180 IVNFITCILVWTFSVKIYS 236
           IV  I  +L WT++ ++YS
Sbjct: 6   IVILILSLLTWTYAEELYS 24


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 180 IVNFITCILVWTFSVKIYS 236
           IV  I  +L WT++ ++YS
Sbjct: 6   IVILILSLLTWTYAEELYS 24


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 186 NFITCILVW 212
           N ITCI++W
Sbjct: 51  NIITCIVIW 59


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 252 TKTFICYKF*LKMSKQVCK**NLQFTLS 169
           TKTF C  + + + K++ K  N  ++L+
Sbjct: 454 TKTFCCKGYCMDLLKELSKTINFTYSLA 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,961
Number of Sequences: 438
Number of extensions: 4157
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)