Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1306
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    31   0.19 
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   2.3  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   9.4  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   9.4  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 161 PMDEIMHAPDDTTCSEGEDDHKKEIRPNANN 253
           P+D    +P+DTT ++GED ++ E+  N NN
Sbjct: 61  PVDSHNESPNDTTINKGEDGNENEV-DNVNN 90


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 23  NRIHFYYYSNLKFYVAFQTLVIVKKTSSNVRDKLT--LSF*KIILEVIPMDEIMHAPDDT 196
           N + FY    L  Y+  Q    VK+  +   DKL+  L   + ++ V+P D ++ +  D 
Sbjct: 92  NNLDFYACIKLVNYIRSQ----VKEGKTPDLDKLSDILRSDEYMISVLPDDSVLFSLGDE 147

Query: 197 TCSEGEDDHKKEI 235
             S+ EDD+  EI
Sbjct: 148 LDSDFEDDNTLEI 160


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 191 DTTCSEGEDDHKKEIRPNANNEQDFPHQ 274
           D    + ED+H +E RP+ + ++D P +
Sbjct: 118 DNIFDDDEDEHVREKRPHDSADEDAPRR 145


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 623 YTNLSNAIGPYSYNDENNFMPDPVFWPVQ 709
           +TN+SN   P   ++ N F  +PV  P Q
Sbjct: 554 FTNISNLTSPIEASNGNTFGSNPVSLPNQ 582


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,170
Number of Sequences: 5004
Number of extensions: 68634
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)