Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1306
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493...    31   0.80 
11_01_0782 + 6543906-6544702,6545717-6547850                           29   3.2  

>12_01_0603 +
           4937472-4938351,4938597-4938689,4938820-4939589,
           4939706-4939809,4940026-4940548,4940697-4941074
          Length = 915

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 601 CIVELIDFVQSKWSCSRWICVYLTCRVPAE*K*MRKCDSVIPC 473
           C   L+  +++KW  S+W   ++  ++PA+ K M KC  V  C
Sbjct: 177 CPWPLVSTMRTKWG-SKWQSKWIYHKIPADLKAMEKCPFVFSC 218


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 524 STREINAYPPGAGPLA-LYKIDEFYNTLDYAVAGYTNLSNAIGPYSYNDENNF 679
           ST     +P   G +  L K+  +   L  + +G+TNL NAI  + ++++N F
Sbjct: 671 STDGSEGFPELMGHMKQLRKVKVWCTELSASSSGFTNLQNAIQKFIHDEQNGF 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,871,896
Number of Sequences: 37544
Number of extensions: 386418
Number of successful extensions: 889
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)