Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1306
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte ... 111 4e-25
AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein. 109 2e-24
AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein. 109 2e-24
AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte ... 109 2e-24
AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte ... 109 2e-24
AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte ... 109 2e-24
Z46242-4|CAA86331.1| 340|Caenorhabditis elegans Hypothetical pr... 32 0.41
AF045643-3|AAC02591.1| 272|Caenorhabditis elegans Hypothetical ... 29 2.9
AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical ... 29 2.9
AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical... 29 5.1
AF043693-9|AAB97533.2| 94|Caenorhabditis elegans Hypothetical ... 28 8.9
>AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform c protein.
Length = 619
Score = 111 bits (268), Expect = 4e-25
Identities = 61/176 (34%), Positives = 89/176 (50%), Gaps = 4/176 (2%)
Frame = +2
Query: 149 LEVIPMDEIMHAPDDTTCSEGEDDHKKEIRPNANNEQDFPHQSTSFSPP---TQMEEKMR 319
LE IP++ + TT +D+ NA+ Q P + E++R
Sbjct: 3 LEQIPLESMSRR--STTDRSDFNDNASNASSNASRRPTINFQEIMEDLPHHERETGERLR 60
Query: 320 RKLQFFFMNPIEKWKAKRKFPYKFVVQVIKIVLVTFQLCLFAHNRYNHVNYTWDNRIAFS 499
R LQFFFMNP+EKWK + + PYK V+QV+KIV VT QL LFA R +HV++ D
Sbjct: 61 RHLQFFFMNPMEKWKVRHQLPYKLVLQVLKIVFVTMQLILFAEMRMSHVDFLEDTTTVMR 120
Query: 500 HLFLLGWDSTREINAYPPGAGPLALYKIDEFYNTLDYAVAGYTNLSN-AIGPYSYN 664
H FL W+ R+ YPP G ++Y L + + Y ++ N + +SY+
Sbjct: 121 HRFLKEWNDDRDALQYPPAEGRYSVYDDQGLSEHLSFLINSYYSIRNDSFASFSYD 176
>AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein.
Length = 668
Score = 109 bits (262), Expect = 2e-24
Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Frame = +2
Query: 236 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 406
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 407 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFLLGWDSTREINAYPPGAGPLALYKID 586
KIV VT QL LFA R +HV++ D H FL W+ R+ YPP G ++Y
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFLKEWNDDRDALQYPPAEGRYSVYDDQ 139
Query: 587 EFYNTLDYAVAGYTNLSN-AIGPYSYN 664
L + + Y ++ N + +SY+
Sbjct: 140 GLSEHLSFLINSYYSIRNDSFASFSYD 166
>AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein.
Length = 611
Score = 109 bits (262), Expect = 2e-24
Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Frame = +2
Query: 236 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 406
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 407 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFLLGWDSTREINAYPPGAGPLALYKID 586
KIV VT QL LFA R +HV++ D H FL W+ R+ YPP G ++Y
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFLKEWNDDRDALQYPPAEGRYSVYDDQ 139
Query: 587 EFYNTLDYAVAGYTNLSN-AIGPYSYN 664
L + + Y ++ N + +SY+
Sbjct: 140 GLSEHLSFLINSYYSIRNDSFASFSYD 166
>AC006679-13|AAL38965.1| 644|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform b protein.
Length = 644
Score = 109 bits (262), Expect = 2e-24
Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Frame = +2
Query: 236 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 406
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 407 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFLLGWDSTREINAYPPGAGPLALYKID 586
KIV VT QL LFA R +HV++ D H FL W+ R+ YPP G ++Y
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFLKEWNDDRDALQYPPAEGRYSVYDDQ 139
Query: 587 EFYNTLDYAVAGYTNLSN-AIGPYSYN 664
L + + Y ++ N + +SY+
Sbjct: 140 GLSEHLSFLINSYYSIRNDSFASFSYD 166
>AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform a protein.
Length = 611
Score = 109 bits (262), Expect = 2e-24
Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Frame = +2
Query: 236 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 406
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 407 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFLLGWDSTREINAYPPGAGPLALYKID 586
KIV VT QL LFA R +HV++ D H FL W+ R+ YPP G ++Y
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFLKEWNDDRDALQYPPAEGRYSVYDDQ 139
Query: 587 EFYNTLDYAVAGYTNLSN-AIGPYSYN 664
L + + Y ++ N + +SY+
Sbjct: 140 GLSEHLSFLINSYYSIRNDSFASFSYD 166
>AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform d protein.
Length = 668
Score = 109 bits (262), Expect = 2e-24
Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Frame = +2
Query: 236 RPNANNEQ---DFPHQSTSFSPPTQMEEKMRRKLQFFFMNPIEKWKAKRKFPYKFVVQVI 406
RP N ++ D PH + E++RR LQFFFMNP+EKWK + + PYK V+QV+
Sbjct: 26 RPTINFQEIMEDLPHHER------ETGERLRRHLQFFFMNPMEKWKVRHQLPYKLVLQVL 79
Query: 407 KIVLVTFQLCLFAHNRYNHVNYTWDNRIAFSHLFLLGWDSTREINAYPPGAGPLALYKID 586
KIV VT QL LFA R +HV++ D H FL W+ R+ YPP G ++Y
Sbjct: 80 KIVFVTMQLILFAEMRMSHVDFLEDTTTVMRHRFLKEWNDDRDALQYPPAEGRYSVYDDQ 139
Query: 587 EFYNTLDYAVAGYTNLSN-AIGPYSYN 664
L + + Y ++ N + +SY+
Sbjct: 140 GLSEHLSFLINSYYSIRNDSFASFSYD 166
>Z46242-4|CAA86331.1| 340|Caenorhabditis elegans Hypothetical
protein F35G12.5 protein.
Length = 340
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 191 DTTCSEGEDDHKKEIRPNANNEQDFPHQSTSFSPPTQMEEKMRRK 325
D C D++ + A +QDF H ST+ S P+ +EE+ R+
Sbjct: 48 DKKCILDNDENHNVLFKFAPIDQDFAHSSTNLSTPSPLEEESARE 92
>AF045643-3|AAC02591.1| 272|Caenorhabditis elegans Hypothetical
protein F58H7.5 protein.
Length = 272
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 170 EIMHAPDDTTCSEGEDDHKKEIRPNA--NNEQDFPHQSTSFSPPTQMEEKMRRKLQF 334
E + +P D+ E E+D +E++ + E++ HQ F P +E+ +RR++ +
Sbjct: 98 EEVDSPQDSP-DEFEEDIAEEVKDKSASEEEEEDEHQVFQFENPRDLEDPLRRRVPY 153
>AF002197-6|AAD34661.1| 446|Caenorhabditis elegans Hypothetical
protein F20H11.4 protein.
Length = 446
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 167 DEIMHAPDDTTCSEGEDDHKKEIRPNANNEQDFPHQSTSFSPPTQMEEKMRRK--LQFFF 340
+E PDD E + + KKE + + ++ + PP +E +K +FF
Sbjct: 53 EEKSKVPDDGKKQEDKKEVKKEEKKKDEKNKKSKNRKSKMKPPPDTQELANKKKFCNWFF 112
Query: 341 MNPIEKWKAKRKF 379
++ ++ K R F
Sbjct: 113 VDELDCKKLMRDF 125
>AL117202-13|CAB55075.1| 580|Caenorhabditis elegans Hypothetical
protein Y47D3A.16 protein.
Length = 580
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = -1
Query: 244 IRSNFLFVIVFAFRTGSIIRGMHDFIHGYNF*YNFLKRQGQFVTNV 107
++S F+ +++AF+TG + + +++ G + L+R+G F+ NV
Sbjct: 142 VKSPFICDLLYAFQTGGKLYLILEYLSGGEL-FMHLEREGMFMENV 186
>AF043693-9|AAB97533.2| 94|Caenorhabditis elegans Hypothetical
protein C34B2.1 protein.
Length = 94
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 260 DFPHQSTSFSPPTQMEEK-MRRKLQFFFMNPIE 355
DF H + F+ PTQ EEK +++KL N ++
Sbjct: 62 DFGHLTAEFTAPTQNEEKPLKKKLVGILKNTLK 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,421,460
Number of Sequences: 27780
Number of extensions: 384263
Number of successful extensions: 1057
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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