Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1306
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 581 IDEFYNTLDYAVAGYTNLSNAIGPYSYNDENNF 679
           +DEF       +  YTNLS  +  Y Y  +  F
Sbjct: 274 LDEFPQPKHMLIEAYTNLSMTMKYYDYGADFPF 306


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 581 IDEFYNTLDYAVAGYTNLSNAIGPYSYNDENNF 679
           +DEF       +  YTNLS  +  Y Y  +  F
Sbjct: 274 LDEFPQPKHMLIEAYTNLSMTMKYYDYGADFPF 306


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 77  TLVIVKKTSSNVRDKLTLSF*KIILEVIPMDE 172
           T  ++++   N  + L LSF   ++++I +DE
Sbjct: 34  TYNVLERPVGNESEPLVLSFGLTLMQIIDVDE 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,855
Number of Sequences: 438
Number of extensions: 5531
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)