Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1304
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0725 - 5987706-5988126,5988610-5988902                           29   3.2  
08_02_1379 - 26540012-26540587,26540804-26540995,26541777-265418...    28   5.5  

>11_01_0725 - 5987706-5988126,5988610-5988902
          Length = 237

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 165 RLSKKYHAKPVTIYITRFYIRSKRLKEYYN*VLLRNNSR 281
           RLSK+YH    ++ +     R  RL+E YN VL R  SR
Sbjct: 117 RLSKEYHPDTTSLPLREASERFIRLREAYN-VLSREESR 154


>08_02_1379 -
           26540012-26540587,26540804-26540995,26541777-26541812,
           26542255-26542488
          Length = 345

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +1

Query: 169 YQRNITQNPSPFTSHDFTYAQNASRNTIIEFY*EIIRALIASFESSLARECRL 327
           Y  N+      FTS    Y   ASR T+ EF      A   +F SS+ R  RL
Sbjct: 275 YYSNLVNGLGLFTSDQVLYTDGASRRTVEEFAVN-QTAFFDAFVSSMVRLGRL 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,797
Number of Sequences: 37544
Number of extensions: 199193
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)