Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1303
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    29   0.72 
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.7  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   5.0  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   8.8  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   8.8  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   8.8  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -1

Query: 340 DL*NYCSMRLFKNVFI-KLS*ILKLSNHNYLSSLVESIKIKTKIVSSVCFFQRESSTLPQ 164
           DL N    RL + + I KL   LKL N  +     ES       V  VC  + +   +P 
Sbjct: 546 DLSNPSYKRLAREIHIEKLPSELKLRNAEFRGIFGESEASTVLFVCRVCSKREDQIRMPG 605

Query: 163 KMYC 152
           +MYC
Sbjct: 606 RMYC 609


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 204 VCVFSKENHQHYLK-KCTVSFFLNLLF 127
           VC+ SKE+ +H+LK K   S F  LLF
Sbjct: 878 VCILSKEDKKHWLKYKKNRSTFAKLLF 904


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/82 (24%), Positives = 30/82 (36%)
 Frame = +3

Query: 444  MTWRSQIVSLQERSHPPNYYSGDRYR*EVEPIYEAVSAKLS*AYHS*YIIRPRGRSPKRW 623
            +TWR Q+ S        N  +G  +     P YE  + +L       + +      P R+
Sbjct: 1138 LTWRFQLHSSGAPGLGANSTNGSNFPASTTPSYENSNRRLQSVSDLSWYVNKTDSEPFRF 1197

Query: 624  SDQIXEQTSGPLSAALHQATDR 689
               I  +T   L   L  A DR
Sbjct: 1198 GTMIAAETFDELENNLALAIDR 1219


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 267 DNFNIYDNFMKTFLNNLIEQ--*FHKSRLFYSKNNIST 374
           D  NI  N +K FLN+L  +   FH S  +Y    IST
Sbjct: 66  DKMNIKTNKIKEFLNDLFTEFSKFHNS--YYPNGRIST 101


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +3

Query: 270 NFNIYDN----FMKTFLNNLIEQ*FHKSRLFYSKNNISTYIDSTSHGQSSVK*SACSHNI 437
           N NI D      +K    NL+ +    +  F+S+NN+S   +S ++     K  + S  +
Sbjct: 225 NLNINDRPPLPVLKNSERNLLHRQLLSNHPFFSQNNVSLSTNSKNYSTDFTKIQSDSSLL 284

Query: 438 ESMTWRSQIVSLQERSHPPNYYSGDR 515
           ++   ++  +   + SH P++    R
Sbjct: 285 QNRQ-QNHRIETDQLSHFPDHLDPSR 309


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +1

Query: 550 SARNCPKLIIASI*YVLEAGAPNVGPTRSXSKPADHLVLHYTRQLTGTDGGWPS 711
           S+R+ P +I     +     +P+     S SKP  H    Y    TG   G+PS
Sbjct: 270 SSRDTPSIIADYDEFRKSESSPSRSSVLSTSKPEVHETEGYCPHKTGNRPGFPS 323


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 354 SKNNISTYIDSTSHGQSSVK*SACSHNIESMTWRSQI-VSLQERS 485
           S +N+ T + S+    SSV  SA S+N +   W++ + +S ++R+
Sbjct: 70  SSSNV-TSLASSEENVSSVSGSAKSNNSQQRVWKTDVAISAEKRT 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,974
Number of Sequences: 5004
Number of extensions: 55682
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)