Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1303
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272...    32   0.57 
08_02_0151 - 13287964-13288661,13289616-13289812,13290005-132905...    32   0.57 
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984...    32   0.57 
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639...    29   4.0  
01_06_0927 + 33082645-33083286                                         29   5.3  
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25...    28   9.2  

>08_02_0154 -
           13324384-13325351,13326306-13326502,13326695-13327274,
           13328324-13328446,13328803-13329130
          Length = 731

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 611 PQTLVRPDLRANQRXXXXXXXPGN*PEPMEAGRRQAETEAPS 736
           P TLV+P +RA +        P + P+P +  R + +T APS
Sbjct: 354 PGTLVKPPIRAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPS 395


>08_02_0151 -
           13287964-13288661,13289616-13289812,13290005-13290523,
           13290912-13291114
          Length = 538

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 611 PQTLVRPDLRANQRXXXXXXXPGN*PEPMEAGRRQAETEAPS 736
           P TLV+P +RA +        P + P+P +  R + +T APS
Sbjct: 251 PGTLVKPPIRAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPS 292


>08_02_0146 -
           13195691-13196658,13197613-13197809,13198002-13198479,
           13199660-13199782,13200139-13200466
          Length = 697

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 611 PQTLVRPDLRANQRXXXXXXXPGN*PEPMEAGRRQAETEAPS 736
           P TLV+P +RA +        P + P+P +  R + +T APS
Sbjct: 320 PGTLVKPPIRAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPS 361


>03_05_0916 -
           28762214-28762414,28763144-28763242,28763573-28763998,
           28764259-28764501,28764706-28764927,28765392-28765721,
           28767380-28767800,28768292-28768404,28769224-28769367,
           28769439-28769570,28769802-28770013,28770983-28771505
          Length = 1021

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +1

Query: 514 DIDRKWNP-----YMRQSARNCPKLIIASI*YVLEAG-APNVGPTRSXSKPADHLVLHYT 675
           D ++K+NP     Y+R   R+ P L++ S  YVLE   +  +    S + PAD LV  Y 
Sbjct: 610 DFNKKFNPQMIIEYLRPLCRSDPMLVLESSLYVLERNPSDTIELFLSENVPAD-LVNSYL 668

Query: 676 RQ 681
           +Q
Sbjct: 669 KQ 670


>01_06_0927 + 33082645-33083286
          Length = 213

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 590 YILAMISLGQFRADC--LIYGFHFLSISVAGVVIWRVRPLLETYYLRSP 450
           Y+  ++S   + A+C  LI  F+ LS S+AGVV   +   +E Y L  P
Sbjct: 35  YVRDLVSAADYEAECLKLISQFNSLSSSLAGVV--TIPRFVEAYRLDCP 81


>03_01_0027 -
           250837-250877,250972-252909,253733-253805,254476-254555,
           255336-255595,255721-255785,256747-256839
          Length = 849

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 585 YIIRPRGRSPKRWSDQIXEQTSGPLSAALHQATDRNRWRL 704
           Y+ R RGR   R  D     T+GP+   ++ +T  N WRL
Sbjct: 94  YLDRHRGRRHTRVVDSSINCTNGPVD--IYYSTPANPWRL 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,272
Number of Sequences: 37544
Number of extensions: 370436
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)