Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1303
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036701-2|AAB88369.2|  625|Caenorhabditis elegans Hypothetical ...    29   2.7  
U27354-1|AAC47124.1|  201|Caenorhabditis elegans cyclophilin pro...    29   4.7  
U00051-7|AAA91355.1|  201|Caenorhabditis elegans Cyclophylin pro...    29   4.7  

>AF036701-2|AAB88369.2|  625|Caenorhabditis elegans Hypothetical
           protein ZC416.6 protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  EWLPSPMDFSNARGRASSCLPMY*D 97
           E +P  +DF N++GR   C P+Y D
Sbjct: 556 ECIPKALDFVNSQGRLKFCRPIYRD 580


>U27354-1|AAC47124.1|  201|Caenorhabditis elegans cyclophilin
           protein.
          Length = 201

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 715 LSTASLHRFRSVAWCSAALSGPLVCSXIWSDQRLGLRPLGRII 587
           +S A L    ++   SA   GP V   ++ D  +G RP+G+I+
Sbjct: 1   MSRALLFFVLAILALSAEARGPRVTDKVFFDMEIGGRPVGKIV 43


>U00051-7|AAA91355.1|  201|Caenorhabditis elegans Cyclophylin
           protein 6 protein.
          Length = 201

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 715 LSTASLHRFRSVAWCSAALSGPLVCSXIWSDQRLGLRPLGRII 587
           +S A L    ++   SA   GP V   ++ D  +G RP+G+I+
Sbjct: 1   MSRALLFFVLAILALSAEARGPRVTDKVFFDMEIGGRPVGKIV 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,030,052
Number of Sequences: 27780
Number of extensions: 316278
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)