Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1303
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 469 VSKSGLTLQITTPATD---IDRKWNPYMRQSARNCP 567
           V  +G+ LQ  T   D   ID+K+N +   +  NCP
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTAVVNCP 567


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 469 VSKSGLTLQITTPATD---IDRKWNPYMRQSARNCP 567
           V  +G+ LQ  T   D   ID+K+N +   +  NCP
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTAVVNCP 567


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 505  PATDIDRKWNPYMRQSA 555
            P  ++DR+  PY+R +A
Sbjct: 1170 PEVELDRELRPYLRTAA 1186


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 652 DHLVLHYTRQLTGTDGGWPSTS 717
           ++ ++  ++Q  G    WPSTS
Sbjct: 573 ENTIIRNSQQAPGQSPDWPSTS 594


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 264 FDNFNIYDNFMKTFLNNLIEQ*FHKS 341
           + N+N Y+N+     NN  ++ ++K+
Sbjct: 324 YSNYNNYNNYNNNNYNNYNKKLYYKN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,963
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)