Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1302
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   5.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   7.1  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   9.4  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    25   9.4  

>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 646 SSGQHTVFVLNHFESHNKSSLLNFLESIPFSQRLN 750
           + G H  F     E+H+ S++L F++ + F++ LN
Sbjct: 506 TEGGHAWFWSVSNEAHDGSAVLRFIDRVNFTKNLN 540


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 121 ETNVATIFFATLRERTIFVGFNSFSNTQTRDWFLFRVRT 237
           E  + T  +A+LR +T++   N FSN       L+R  T
Sbjct: 815 EYTLRTRIWASLRTQTLYRTINGFSNYSRAIKLLYRTET 853


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 636 LVMKPHPKPQFIAGLLSFNVDVSSSVMIPVKVVQKLQSPKK 514
           LV KP+ +   IAGL +    +  +V++P+K+ Q     +K
Sbjct: 120 LVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRK 160


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 175 QKLFVHGVLQKKWWPRLS 122
           ++LF+H +  ++WW +LS
Sbjct: 448 RQLFLHKLTSREWWEKLS 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,717
Number of Sequences: 5004
Number of extensions: 77040
Number of successful extensions: 261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)