Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1302
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0185 + 13206920-13207650,13208671-13208734,13208927-13208938 31 1.4
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381... 29 3.2
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 29 4.2
10_03_0033 - 7248131-7248711,7248947-7249079,7249470-7249994,725... 29 5.6
02_05_1067 - 33858215-33858321,33858422-33858527,33859014-338592... 29 5.6
01_03_0138 + 12963464-12965059,12965085-12965660 29 5.6
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420... 29 5.6
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588... 28 7.4
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 28 9.8
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 28 9.8
>09_03_0185 + 13206920-13207650,13208671-13208734,13208927-13208938
Length = 268
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = -3
Query: 535 KTAVSQENVDAVRKLIEEDRHVAYREIQATLDIGMSQIQIILHEQLGVKKLFSRWIPHSL 356
K + QE ++ + K +E+ ++QA +D+ + + +L EQ+ V + R +P +L
Sbjct: 21 KVGLIQEKLEVMDKKLEKQGE-RLDQVQAKVDLSLESLGQVLQEQIHVMQAVKRTVPATL 79
>10_01_0345 -
3811057-3811236,3811342-3811615,3811732-3812289,
3812602-3812747,3812930-3813097,3813896-3814003,
3814859-3815029,3816557-3816949,3817522-3817617,
3817715-3817774,3818600-3818744,3819296-3819520,
3820106-3820254
Length = 890
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 397 LIVHARLFVFDSCQCLKLPEFRGMPHVDLPQSAYAQHQR 513
L+VH + F + KL F P DL S YA H R
Sbjct: 764 LVVHLKRFSYSRFMKNKLDTFVNFPIHDLDMSRYANHSR 802
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 388 KLFSRWIPHSLCEEQKAARVTWCVRTLERFHAG 290
+LF +W PHS E +K R W R LE F G
Sbjct: 175 RLFRKWFPHSGSEFEKDLRNEWW-RGLELFWQG 206
>10_03_0033 -
7248131-7248711,7248947-7249079,7249470-7249994,
7250545-7250764,7250913-7251145
Length = 563
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1
Query: 363 IRSVKSKRRLALLGASELSKDSTQDPQMLYTTLY-QVTNPEYT 238
+R+V SK + L +L+KD + L+TT++ ++ +P+YT
Sbjct: 387 LRTVHSKFKAVLTALLKLAKDIIRPKDPLFTTVHKKLLSPQYT 429
>02_05_1067 -
33858215-33858321,33858422-33858527,33859014-33859218,
33859463-33859650,33859780-33859957,33860201-33860298,
33860619-33860873,33861002-33861236,33861846-33861973
Length = 499
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 664 VFVLNHFESHNKSSLLNFLESIPFSQRLNKFDKTS*LDRES 786
VF + SH S+LL F E +PF KF + S L RES
Sbjct: 323 VFTSSVESSHRLSTLLEFFEDLPF-----KFSEYSRLQRES 358
>01_03_0138 + 12963464-12965059,12965085-12965660
Length = 723
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +2
Query: 425 LTHANV*SCLNFAVCHMSIFLNQLTHSINVFLGDCSFWT 541
+THA CH+S + L ++ L DC WT
Sbjct: 554 ITHARTSPDNKIVACHLSYYCAYLVAAVPELLPDCPAWT 592
>01_03_0012 +
11638363-11638476,11638854-11640678,11641855-11642096,
11642198-11642327,11642464-11642774
Length = 873
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = -1
Query: 168 CSFTECC---KKNGGHVCLQNRPCYD 100
C + CC + N GHVC NR YD
Sbjct: 457 CVYESCCDLSQGNDGHVCFCNRNLYD 482
>01_03_0271 +
14454681-14456949,14457222-14457476,14458800-14458864,
14459053-14459171,14459270-14459324
Length = 920
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 4 LQFSLRSSKTTCGKQMLAYHSALTVLCFSRGIVVTWPVL 120
L+ S+ + T CG AY SA TVL S+G V +W L
Sbjct: 287 LETSIVNFYTRCG----AYQSAATVLQNSKGTVASWNAL 321
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -3
Query: 667 KQCVDRMISAFGDEAPSKTTIYRWFAEFQRGRVKLSDDPRQGRPKTAVSQENVDAVRKLI 488
KQCVD++ S D+ + + A+ R + S+D + +S + V K
Sbjct: 64 KQCVDKVFSGSDDDNTNNNAPEKDEAKDDRSSKEESEDAQPTSDSNKISSNADEPVAKSS 123
Query: 487 EEDR 476
E DR
Sbjct: 124 ETDR 127
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/80 (23%), Positives = 31/80 (38%)
Frame = -3
Query: 682 SGLTQKQCVDRMISAFGDEAPSKTTIYRWFAEFQRGRVKLSDDPRQGRPKTAVSQENVDA 503
S Q Q V ++S AP + W + +R + L +DP + AV+
Sbjct: 359 SSSQQLQSVPLLLSTSSPSAPMAVLLEPWDHQLERADLCLQEDPPKRNEGMAVACIEPPP 418
Query: 502 VRKLIEEDRHVAYREIQATL 443
+ E RH+ +Q L
Sbjct: 419 TPEQYEGFRHLVINYVQNVL 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,646,023
Number of Sequences: 37544
Number of extensions: 465499
Number of successful extensions: 1208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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