Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1300
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    28   1.8  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    28   1.8  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.4  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   2.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.4  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   3.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    27   3.2  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    27   4.2  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    26   5.6  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   5.6  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   5.6  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   9.8  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   9.8  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 251 DNPPPPVEEPGQAMDKPPEPKPNLIDKLVIIFAETKTHSPRFTLP 385
           D  PPP ++  +   KP E    ++D    +FAE K    + T P
Sbjct: 855 DGEPPPSDKSSKEKVKPREIDIRIVDFANCVFAEDKELLAKATCP 899


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
 Frame = +2

Query: 533 TRDYELARIGQGSAALIAYVRQLHLTARS-KPQDVVTTPTEQVKVLDSIFGEELYN---G 700
           T +  L +I  G  + ++Y+    +  R  KP +++ T   QVK+ D     EL N   G
Sbjct: 178 TGERPLGKIAFGVLSGLSYLHDRKIIHRDIKPSNILLTSKGQVKLCDFGVSGELVNSLAG 237

Query: 701 TF--VEWMASGGRWQSTSYLESARGWS 775
           TF    +  +  R    SY  S+  WS
Sbjct: 238 TFTGTSYYMAPERISGGSYTISSDIWS 264


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 230 MAEKTDQDNPPPPVE-EPGQAMDKPP 304
           M  K  +  PPPP+  EPG+ M  PP
Sbjct: 212 MHHKPGEHMPPPPMHHEPGEHMPPPP 237



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 230 MAEKTDQDNPPPPVE-EPGQAMDKPP 304
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 225 MHHEPGEHMPPPPMHHEPGEHMPPPP 250



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 230 MAEKTDQDNPPPPVE-EPGQAMDKPP 304
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 238 MHHEPGEHMPPPPMHHEPGEHMPPPP 263



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 230 MAEKTDQDNPPPPVE-EPGQAMDKPP 304
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 251 MHHEPGEHMPPPPMHHEPGEHMPPPP 276



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 230 MAEKTDQDNPPPPVE-EPGQAMDKPP 304
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 264 MHHEPGEHMPPPPMHHEPGEHMPPPP 289



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 230 MAEKTDQDNPPPPVE-EPGQAMDKPP 304
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 277 MHHEPGEHMPPPPMHHEPGEHMPPPP 302



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 230 MAEKTDQDNPPPPVE-EPGQAMDKPP 304
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 290 MHHEPGEHMPPPPMHHEPGEHMPPPP 315



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 230 MAEKTDQDNPPPPVE-EPGQAMDKPP 304
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 303 MHHEPGEHMPPPPMHHEPGEHMPPPP 328



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 230 MAEKTDQDNPPPPVE-EPGQAMDKPP 304
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 316 MHHEPGEHMPPPPMHHEPGEHMPPPP 341


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 254 NPPPPVEEPG-QAMDKPPEPKP 316
           NPPPP   PG +   +PP P P
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPP 29


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 404  PNELYRRLLPAMLFVLTFVTVMTMLLIYM 490
            P+  Y+RL+  +LF     T++T+LL+++
Sbjct: 954  PSNFYKRLIALLLFCWICSTLVTVLLVFV 982


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 257 PPPPVEEPGQAMDKPPEPKP 316
           PPPP   PG A   PP P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 260 PPPVEEPGQAMDKPPEPKPNLIDKLVII 343
           P P E+P +  +KPP+ K + ++K   I
Sbjct: 493 PVPKEKPSEKSEKPPKKKGSKLEKFCCI 520


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 581 IAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGE 685
           I+Y++ L      K  DV+TTPT+ V V++   GE
Sbjct: 83  ISYLKLLRHPHIIKLYDVITTPTDIVMVIEYAGGE 117


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 678 LERNCTMAHLWSG 716
           L+ NCT+A LWSG
Sbjct: 126 LQHNCTLADLWSG 138


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 263 PPVEEPGQAMDKPPEPKPNLIDKLVIIFAETKTHS 367
           PP+E P Q   KP +    + DK    + + K H+
Sbjct: 90  PPIETPSQFWRKPLQYVSKVTDKCKSFYEKEKNHA 124


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 782 PVLTSPVLIPDSWCFAIVHQKPSTP-QMCHCTIPLQKWNPK 663
           P  TSP + P+    +I   +PSTP ++   T+P  K NPK
Sbjct: 426 PTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVP--KMNPK 464


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 715 PLHKCAIVQFLSKNGIQNLHLLCRCGNNILRFGTS 611
           P    +++  L + G  +   +C   +NI+RFG++
Sbjct: 277 PTEVASVISTLMEQGFWSFEAICIYSDNIIRFGSN 311


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 299 PPEPKPNLIDKLVIIFAETKTHSPRFTLPAFMKAPPNELYRR 424
           PP+    L+DKLV  F E++  +P F +       P   Y R
Sbjct: 440 PPQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSPLAKYHR 481


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 167 ISGLCPFFVFFLMQGIENKVIMAEKTDQDNPPP 265
           I  L P FVF     I+ +V+  ++   +N PP
Sbjct: 438 IQNLPPLFVFNARSVIDKEVVPEQEKSAENQPP 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,296
Number of Sequences: 5004
Number of extensions: 74131
Number of successful extensions: 240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)