Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1300
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 391 ECRQCESRTMCFCFGKN 341
           EC+ C S+T C CF ++
Sbjct: 436 ECKTCNSKTKC-CFAQD 451


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 176 LCPFFVFFLMQGIENKVIMAEKTDQDNPPPPVEEPGQAMDKPPE 307
           +C  FVF  +  +E  ++     D D PP P   P       P+
Sbjct: 313 VCTVFVFMAL--MEYCLVNIVLGDSDTPPKPAPPPPPPSSSGPD 354


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 697 IVQFLSKNGIQNLHLL 650
           I+QF++KNG  N +L+
Sbjct: 488 ILQFITKNGTSNNYLI 503


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 729 PPEAIHSTNVPLYNS 685
           P E +H TN+  YNS
Sbjct: 654 PSERVHVTNMDQYNS 668


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,081
Number of Sequences: 438
Number of extensions: 5306
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)