Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1298
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-7|AAM81115.1|  668|Caenorhabditis elegans Proteasome regu...   189   2e-48
U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome regu...   189   2e-48

>U39851-7|AAM81115.1|  668|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 2, isoform a
           protein.
          Length = 668

 Score =  189 bits (460), Expect = 2e-48
 Identities = 89/224 (39%), Positives = 135/224 (60%), Gaps = 1/224 (0%)
 Frame = +2

Query: 5   DMLILKNTKDAIRVSICHTATVIANAFMHAGTTSDQFLRDNLEWLARATNWAKLTVTASL 184
           D ++++  K+ IR +  H A +I+N  M  GTT D FLR+NL W+++ATNW K    ASL
Sbjct: 326 DSVLMEEIKENIRTASAHNALLISNGLMQYGTTCDDFLRNNLNWVSKATNWNKFNAVASL 385

Query: 185 GVIHRGHENESLALMQSYLPKEAGPSSGYSEGGGLYALGLIHANHG-ANIIDYLLTQLKD 361
           G+IH G E+ ++ +++ YLPKE+    G+ EGG + A GLIHA HG A  +  L   LK 
Sbjct: 386 GLIHHGQESSAMKVLEPYLPKESVEGFGFKEGGAMLAYGLIHAKHGDATAMSTLAQWLKT 445

Query: 362 AQNEMVRHXXXXXXXXAAMGTHRQDVYEQLKFNLYQDDAVTGEAAGIAMGMVMLGSRHAA 541
           A+NE VRH        A +G+     YE+++  L +D+AV+GE+AGIAMG++M G  +  
Sbjct: 446 AENEPVRHGACLGFGVAGLGSSSVSNYEKVREVLQRDEAVSGESAGIAMGLIMAGHLNQE 505

Query: 542 AIEDMVAYAQETQHEKILRGLAVGIAFTMYGRLEEADALVSATI 673
              ++  Y  +TQH+K  RG+  G+A   +G   +A+  +   I
Sbjct: 506 VFNELKQYTVDTQHDKTQRGIRTGLACAAFGLQGDAEPYIKEAI 549


>U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 2, isoform b
           protein.
          Length = 965

 Score =  189 bits (460), Expect = 2e-48
 Identities = 89/224 (39%), Positives = 135/224 (60%), Gaps = 1/224 (0%)
 Frame = +2

Query: 5   DMLILKNTKDAIRVSICHTATVIANAFMHAGTTSDQFLRDNLEWLARATNWAKLTVTASL 184
           D ++++  K+ IR +  H A +I+N  M  GTT D FLR+NL W+++ATNW K    ASL
Sbjct: 326 DSVLMEEIKENIRTASAHNALLISNGLMQYGTTCDDFLRNNLNWVSKATNWNKFNAVASL 385

Query: 185 GVIHRGHENESLALMQSYLPKEAGPSSGYSEGGGLYALGLIHANHG-ANIIDYLLTQLKD 361
           G+IH G E+ ++ +++ YLPKE+    G+ EGG + A GLIHA HG A  +  L   LK 
Sbjct: 386 GLIHHGQESSAMKVLEPYLPKESVEGFGFKEGGAMLAYGLIHAKHGDATAMSTLAQWLKT 445

Query: 362 AQNEMVRHXXXXXXXXAAMGTHRQDVYEQLKFNLYQDDAVTGEAAGIAMGMVMLGSRHAA 541
           A+NE VRH        A +G+     YE+++  L +D+AV+GE+AGIAMG++M G  +  
Sbjct: 446 AENEPVRHGACLGFGVAGLGSSSVSNYEKVREVLQRDEAVSGESAGIAMGLIMAGHLNQE 505

Query: 542 AIEDMVAYAQETQHEKILRGLAVGIAFTMYGRLEEADALVSATI 673
              ++  Y  +TQH+K  RG+  G+A   +G   +A+  +   I
Sbjct: 506 VFNELKQYTVDTQHDKTQRGIRTGLACAAFGLQGDAEPYIKEAI 549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,883,599
Number of Sequences: 27780
Number of extensions: 290634
Number of successful extensions: 819
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)